Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00470 ATGGTGGTCGTCTTCACAAATTCTGTGTTACCGAAAAATCCTTCCTTTCCCAACTCACAGGGCTCACACTCCCAGTCAATCAATTTCGAATTTGAATCATCTTTCGTCATTACCTCCATGACGAGCCTCGAGGAGCCACTCAATCGGCAAACAAGACCAAGCAAGAAGCCAAAAATGGTTGAGCCAGTTCAGTTTCCCCCTTCAATTGAGGTTGTGGACGTTGAATCCTTTTACTTCACACCCATCTCAAACAAGGGCACCAACCAGTCCAATGCAATCTCCGTTGAGCAGTACGCCGATCACAGAGATCTCAACCTCGCGATCATGGATTCTCTGGGCAAAACCAAGCCTACCCCAGAAACCCTCATCGACCTTTCCGACGGTGAGGACGATGACGAGGTGAGAATTCTAAAGTTTAAGCCTGAGAAAACCCCTTTCGGAAAAAGAAGGAACTCGAGAAACCCTTTTGTAAATGATGCTTCCTTTAGTGAAAAAGGGGAGTCTTCCAATAGCCCACCTTTTGTTTGTGAAATTTGCACTGAGACCAAGACAGTAAAGGAGTCATTCAGCATCAGTGGTTGCTCTCACGCTTATTGTACTGAGTGTATAACTATGTATGTGGCATCTAGGCTACAGgaaaatatcatcaacattCGGTGCCCTGTATCTGAGTGCAAAGGGTTGTTGGAACCTCATGATTGTCGTTCAATTCTTCCTCCTGAAGTGTTTGATAGGTGGGGTAACGCCATGTGCGAGGCTGTAATTCTTGCTTCCGAAAAGTTCTATTGCCCATTCAAGGACTGCTCTGCTCTACTGATTGATGATGGAAATGAGGTTGTGAAGGAGTCGGAGTGTCCAAATTGTAAGAGGTTCTTCTGTGCACAGTGTAAGGTGCCTTGGCACTCAGGGATGGATTGCACAGAGTTTCAGAAATTGAACAAAGACGAGAGAGAGATGGAAGATATCCTGTTGATGGAGCTTGCCCATAACAAGAAGTGGAGGAGGTGTCCTAAGTGTAAATTCTACGTAGAGAAATCTGAGGGCTGCATGTATATGAAATGCAGGTGTGGAGTTGCTTTCTGTTATAGCTGCGGAACTCTTGCCACCACTAGTTCGCATTACTGCTCCAAGTGTAGACGCTA 1142 0.4518 MVVVFTNSVLPKNPSFPNSQGSHSQSINFEFESSFVITSMTSLEEPLNRQTRPSKKPKMVEPVQFPPSIEVVDVESFYFTPISNKGTNQSNAISVEQYADHRDLNLAIMDSLGKTKPTPETLIDLSDGEDDDEVRILKFKPEKTPFGKRRNSRNPFVNDASFSEKGESSNSPPFVCEICTETKTVKESFSISGCSHAYCTECITMYVASRLQENIINIRCPVSECKGLLEPHDCRSILPPEVFDRWGNAMCEAVILASEKFYCPFKDCSALLIDDGNEVVKESECPNCKRFFCAQCKVPWHSGMDCTEFQKLNKDEREMEDILLMELAHNKKWRRCPKCKFYVEKSEGCMYMKCRCGVAFCYSCGTLATTSSHYCSKCRR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00470 380 SUPERFAMILY RING/U-box 251 311 - -
Bva06g00470 380 Pfam IBR domain, a half RING-finger domain 252 306 IPR002867 -
Bva06g00470 380 SUPERFAMILY RING/U-box 317 378 - -
Bva06g00470 380 SUPERFAMILY RING/U-box 171 253 - -
Bva06g00470 380 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 72 379 - -
Bva06g00470 380 ProSitePatterns Zinc finger RING-type signature. 194 203 IPR017907 -
Bva06g00470 380 Gene3D - 303 380 - -
Bva06g00470 380 SMART ring_2 176 223 IPR001841 -
Bva06g00470 380 SMART ring_2 336 378 IPR001841 -
Bva06g00470 380 ProSiteProfiles TRIAD supradomain profile. 172 380 IPR044066 -
Bva06g00470 380 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 72 379 IPR031127 GO:0004842|GO:0016567
Bva06g00470 380 ProSiteProfiles Zinc finger RING-type profile. 176 224 IPR001841 -
Bva06g00470 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 256 IPR013083 -
Bva06g00470 380 SMART ibrneu5 317 378 IPR002867 -
Bva06g00470 380 SMART ibrneu5 244 306 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00470 Bva-Chr6 5408945 5411150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00470 176 366 C3H Transcription Factor Family AT2G19610 27.363 1.62e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00470 K11975 - twl:120005643 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00470 06 5408945 5411150 Bva06g00470 06 5408945 5411150 ECH