Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00469 ATGATGTTCCATGCTCTAGGTCCTTCAAGACATTGTAGTCTCCTCGCTGTCCTGTGCGGAAAATCACgtgaaattaaacaaaagcAGAAGCAGGATGCTTCTGCTGATCTATCTCAATACCCCTTTCCGGAGCTTGCTTCATCTGGTCGTTTAGAGGTTAAAGTTTTGACCAAACCAACGACTGACGAGCTTAGGAAAGTTTTAGAATCACTGGAGCCTAATTTTGTTTACCTACAAGGCGAGCAGCTAGAAGATAATGGAGAAATTGGGTCTCTTGTATGGGAAGATGTTGACCTTTCTAGCCCAGAAGCCTTATGTGgattattttcttccaaattaCCCAATACGGTTTATTTGGAAACTCCTAAAGCAGAAAAATTGGCAGAGGCACTCCATTTTAAGGGAGTTCCTTACACAATATACTGGaaaagtgaattttcaaaatatgcaGCTTCACATTTTCGTCAAGCTTTTTTCTCAGTGGCACAAAGTACGTCTGGCCATACCTGGGATGCTTTTCGGCTTTCTCTTGCTTCTTTTAAACTATACTGTGTACACAATAATATCTTGCCATCCAACAGCCAGAAGGGTGGCGGCAAGCATTGGCCACGAATGCTTGGGGACCCTCCCAAAATTGATATTGGTCCATATGAGGTAGACATGAATGGGGAGGAAACCTCACCTGAGACTACTTCTGCTGTAAAGATTTATGACGATGATGTGAACACGAGATTTCTTGTCTGTGGAGTTCCCTGCTCATTGAAGGATGCTAGCTTATTGGGATCGCTGGAGGATGGACTCAGTGCTCTCCTGTGCACGGAAATACGGGGATGTAAACTTCATAATCGGACAAGTGTTCCACCACCGCCTCTTCAGGCAGGGACATTTTCACGTGGTGTGGTGACAATGCGTTGTGATATATGCACATGCAGTTCTGCTCATATATCACTTTTAGTATCTGGTAGTGCAGAAGCTTGTTTCAATGACCAGCTTTtggaaaatcatattaaaaaggAACTCATTGAGGAGAGTCAGCTAGTCCAGGCATTGCCTAATTGTGAAGAAAGCAAACTCTCTGAGCCCCGAAGGTCAACTTCAGTAGCATGTGGAGCTAGTGTGTTTGAAGTTTACATGCGATTGCCTACATGGGCTTCACAGGTTCTGAGACAACTTGTACCAGACAGATCATACCGCAGCCTGGTTATGTTGGGAGTTGCCAGTTTTCAAGGATTGTCTGTTGCATCTTTTACCAGAGATGATGCAGAAcgtctccttttcttttgtactaggcaggcaaaagaaaattgtccCAAAGAGCCTGTTTTCTCTGGGCATCCTAGTTGGTTAGTGCCTCCAGCACCTGCTCGAAAAAGATCAGAGCCATCCTCACTAGCAAAATCAATCAGTGCTAGCAGTCTGGGAGGCTATAATGTTCAACAGGAGTTGAACATTGCTGCATTGAGGCCAATCCCTCACTCTTGTCGTCACAAGATCCTACCTTTTTCTGGATTGTCTGAGGGTGAAAAAAATGATGGAGACCGCAGAAAAACAAATCTGCCTGTAGGAACTACGAAGCATAATGTTCTAGGTCCTGCTTCAGTTACACATAGGAAATCTTTGTCAAGCTTATTTCAGACCCAACAGATTATTTCTTTGAACCCACTACCTCTGAAGAAACATGGTTGTGACAGAGGTCCAATTCGGGTTTGCTCAGAGGAGGAATTCCTGAAGGATGTAATGCAATTTTTGACCCTTCGTGGACATACTCGTCTCATTCCACAAGGTGGACTTGCTGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTGGGAAATGGTATCAATTGGAAAGGACAAGTTTTTTCAAAGATGCGCAACCACACTTTGACAAATAGAATGACCGGTGTGGGTAATACACTGAAAAGACATTATGAAACTTATCTTCTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATTCTGCTTGTTATGTCACagTAGTGCAGCAGGTGACTGGGTGAATTGTGGTATTTGTGGCGAGTGGGCTCACTTTGGCTGTGATAGGCGGCAGGGACTAGGTGCATTCAAGGACTATGCTAAAACTGATGGCTTGGATTACATTTGCCCCCATTGCAGCATCTCACATTTCAAGAAGAAATGCCAGAAAACTACCAATGGGTTTTA 2240 0.417 MMFHALGPSRHCSLLAVLCGKSREIKQKQKQDASADLSQYPFPELASSGRLEVKVLTKPTTDELRKVLESLEPNFVYLQGEQLEDNGEIGSLVWEDVDLSSPEALCGLFSSKLPNTVYLETPKAEKLAEALHFKGVPYTIYWKSEFSKYAASHFRQAFFSVAQSTSGHTWDAFRLSLASFKLYCVHNNILPSNSQKGGGKHWPRMLGDPPKIDIGPYEVDMNGEETSPETTSAVKIYDDDVNTRFLVCGVPCSLKDASLLGSLEDGLSALLCTEIRGCKLHNRTSVPPPPLQAGTFSRGVVTMRCDICTCSSAHISLLVSGSAEACFNDQLLENHIKKELIEESQLVQALPNCEESKLSEPRRSTSVACGASVFEVYMRLPTWASQVLRQLVPDRSYRSLVMLGVASFQGLSVASFTRDDAERLLFFCTRQAKENCPKEPVFSGHPSWLVPPAPARKRSEPSSLAKSISASSLGGYNVQQELNIAALRPIPHSCRHKILPFSGLSEGEKNDGDRRKTNLPVGTTKHNVLGPASVTHRKSLSSLFQTQQIISLNPLPLKKHGCDRGPIRVCSEEEFLKDVMQFLTLRGHTRLIPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGEFCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDYICPHCSISHFKKKCQKTTNGF 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00469 746 SUPERFAMILY FYVE/PHD zinc finger 665 733 IPR011011 -
Bva06g00469 746 SMART ARID_2 566 669 - -
Bva06g00469 746 SMART PHD_3 679 731 IPR001965 -
Bva06g00469 746 CDD PHD_ARID4_like 679 730 - -
Bva06g00469 746 MobiDBLite consensus disorder prediction 505 526 - -
Bva06g00469 746 Gene3D - 567 674 IPR036431 GO:0003677
Bva06g00469 746 SMART bright_3 570 674 IPR001606 GO:0003677
Bva06g00469 746 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 746 IPR042293 -
Bva06g00469 746 Pfam ARID/BRIGHT DNA binding domain 572 669 IPR001606 GO:0003677
Bva06g00469 746 SUPERFAMILY ARID-like 570 684 IPR036431 GO:0003677
Bva06g00469 746 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 7 746 - -
Bva06g00469 746 CDD ARID 571 669 - -
Bva06g00469 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 731 IPR013083 -
Bva06g00469 746 ProSiteProfiles ARID domain profile. 569 673 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00469 Bva-Chr6 5399804 5406959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00469 2 745 ARID Transcription Factor Family AT3G43240 63.733 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva06g00469 ARID 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00469 - - gmx:100775894 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00469 06 5399804 5406959 Bva06g00469 06 5399804 5406959 ECH