Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00454 ATGGAAGCTCCTCCTTTCCAAGAAGCTGCGCGATGTAGTGTCTGCAATAGCAGCTTCAGCACCTTCCGAAGACGGCATCACTGTAGATGTTGTGGGAGAACGCTGTGCAATGAACATTCATCAAATCAAGTGGCTTTACCACAATTTGGTATTTACTCAAATGTCAGAGTATGTGCCGATTGCTTCAATAATACACAATCTGGGAAGGATGTTCCACAGGCTTCTTCAGATGGAGTAAACAACGTgacaaattcaatttctaaacTTAACATTGATGAAAATATACATTCAAAGAATGCCTCAACTGTGGAGAATAAGCCTGTATCAAGCAATAAAGAGTGTAAGTGTGGGATGCCTCTTTGCATTTGTGAAGCACCCGCACCTTCCACTGATGCAGTCCCCCAGCAGAACAAATCTACTTCAGTCATTACACCTCAGCCAAATCCTAAACCAAAGAAGTCAGATGCCCCAAAAAGCAGAAGCTCCACTTCAAACAGCAAGTTTAGTTCTACATTTAACAATGGTACTTCAGACAGACCCCAGTTGGACTATGAAGCTAGTGGAGAGGGTTTAAGAGAAGCAATTAAAAATGGTGAAATTGTTGCTGTCAAGAAACTTCTGAATCAGGGTGTAGATGCAAATTACAGGGACAAGCAAGGATTGTCTTTACTGCATTTGgcTGCACTCTTCAATCAAACTGATATAGTTTTCACTCTCATGGATTCTGGGGCAAGTCTGGATTATAAGAATGCACAAGGAGAAACTCCTTTAGATTGTGCTCCAGCGACCTTGCAATACAAGATGCGAAAGAAGATGGAAGAAGGTGGGGCTATGGAACAGAGCATTTG 848 0.4127 MEAPPFQEAARCSVCNSSFSTFRRRHHCRCCGRTLCNEHSSNQVALPQFGIYSNVRVCADCFNNTQSGKDVPQASSDGVNNVTNSISKLNIDENIHSKNASTVENKPVSSNKECKCGMPLCICEAPAPSTDAVPQQNKSTSVITPQPNPKPKKSDAPKSRSSTSNSKFSSTFNNGTSDRPQLDYEASGEGLREAIKNGEIVAVKKLLNQGVDANYRDKQGLSLLHLAALFNQTDIVFTLMDSGASLDYKNAQGETPLDCAPATLQYKMRKKMEEGGAMEQSI 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00454 282 SUPERFAMILY Ankyrin repeat 192 262 IPR036770 -
Bva06g00454 282 Pfam FYVE zinc finger 7 66 IPR000306 GO:0046872
Bva06g00454 282 ProSiteProfiles Ankyrin repeat region circular profile. 219 250 - -
Bva06g00454 282 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Bva06g00454 282 SMART ANK_2a 219 248 IPR002110 GO:0005515
Bva06g00454 282 SMART ANK_2a 177 215 IPR002110 GO:0005515
Bva06g00454 282 CDD FYVE_scVPS27p_like 5 62 - -
Bva06g00454 282 SUPERFAMILY FYVE/PHD zinc finger 7 79 IPR011011 -
Bva06g00454 282 MobiDBLite consensus disorder prediction 130 148 - -
Bva06g00454 282 MobiDBLite consensus disorder prediction 130 185 - -
Bva06g00454 282 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 4 275 - -
Bva06g00454 282 MobiDBLite consensus disorder prediction 158 181 - -
Bva06g00454 282 Gene3D - 169 267 IPR036770 -
Bva06g00454 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Bva06g00454 282 Pfam Ankyrin repeats (3 copies) 193 260 IPR002110 GO:0005515
Bva06g00454 282 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 6 66 IPR017455 -
Bva06g00454 282 SMART fyve_4 1 67 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00454 Bva-Chr6 5307205 5312161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00454 198 277 MAP Kinase Kinase Kinase AT3G58760 36.250 5.56e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00454 - - gmx:100814367 423.705