Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00436 ATGGAAGAGAAAGTTGCAGTAAAAGAGTTCCAGCTGGAAGTTGAAGAAAAGTCACCACCACACACATACGATAATAAGATGGATGCACCAAAGAGGGCTGAGCTTGAATCCAATCTTCTGAGTTTGAGTCTGAATAATTCTGAACAGCTTCAAGAAATGCAAGAGCAGCCCTTAACTCAACTGGGATTGCTGAGAATCAAGCTAGAAGAACTGAAGCAAGAGAATCAGAACCTAAGATCTATGTTAAGTCAGGTATCTGAACACTACACTGCTCTTCAGAATCGCATGCATTCGGTGGTGAAGCAGCTGGAGcaatcatcatcttcatctcACAATTGTCATGACCTGCATCTGAAGGACAAAAGACAAGACGAAATATTGGAGAAGCAAGCATTTCCCACATGGCAGTTCCTGGCCATCAATGACCCTTCACCTTCCCATGGAAAGACGGTGGAAGGATTTGACtctccaaaaaataatattgggAAACACGAATGCACCAGACTTGCACTTGCACACAATGTGGGAGGTGatataaataaccaaataagACCAGAAGGTGCAAAAACCATAGAAGATCAAGCATCTGAGCCATCTTGTAGGAAAGCTAGAGTATCCATAAGGGCAAGAtcagatttttctttgATGGGTGATGGGTGTCAATGGAGAAAGTATGGGCAAAAGACAGCGAAGGGCAACCCATGTCCCCGGGCTTACTACCGCTGCAGCATGGGAACTGCGTGTCCTGTTCGTAAACAGGTACAAAGGTGTGCTAACGATGAGACTGTTCTGATTACAACCTACGAAGGGAAGCATAACCATCCACTCCCAGCAGCAGCAAGAGCTTTGGCAAGCACAACATCAGCAGCATTGAGCATGTTCCTTTCTGGGTCAACCACAAGTCAACAAGGCAGCACACTACCAAACAATTGTGGCCTCTTCTCTTCATCATTATCTAGTTCTGTCCCCACCAACTTGGCAAGCTTCTCTTCATCTGCATCGTGTCCCACGATGACACTGGACTTGACCCAGTCCAACCCCAGCAACATCTTGCAGTTCCAAAGAGCTACCTCATTGAACCTCACCCAATCATTCCCTTTGCCATTGCTTGGTTGCACTCAACAGTCTCAGGGCTTTTACTTGTCTTCCAAGCTTCCAACCATGGTGCCCTTAGAGAAAGAGCCTTCCTTGGTGGATATGGTCAGTGCTGCAATAGCAAAGCATCCTTCTTTCAAGGCTGCATTGGCTACTGCCATTTCATCTTTCAATGGACCCTCTcagaaatatta 1289 0.4368 MEEKVAVKEFQLEVEEKSPPHTYDNKMDAPKRAELESNLLSLSLNNSEQLQEMQEQPLTQLGLLRIKLEELKQENQNLRSMLSQVSEHYTALQNRMHSVVKQLEQSSSSSHNCHDLHLKDKRQDEILEKQAFPTWQFLAINDPSPSHGKTVEGFDSPKNNIGKHECTRLALAHNVGGDINNQIRPEGAKTIEDQASEPSCRKARVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCANDETVLITTYEGKHNHPLPAAARALASTTSAALSMFLSGSTTSQQGSTLPNNCGLFSSSLSSSVPTNLASFSSSASCPTMTLDLTQSNPSNILQFQRATSLNLTQSFPLPLLGCTQQSQGFYLSSKLPTMVPLEKEPSLVDMVSAAIAKHPSFKAALATAISSFNGPSQKY 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00436 429 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva06g00436 429 SUPERFAMILY WRKY DNA-binding domain 209 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva06g00436 429 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 427 - -
Bva06g00436 429 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva06g00436 429 Gene3D WRKY domain 200 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva06g00436 429 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 427 IPR044810 GO:0003700
Bva06g00436 429 Coils Coil 61 88 - -
Bva06g00436 429 SMART WRKY_cls 216 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00436 Bva-Chr6 5226132 5228749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00436 64 422 WRKY Transcription Factor Family AT4G04450 40.494 2.65e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva06g00436 WRKY 2.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00436 - - gmx:100797109 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00436 06 5226132 5228749 Bva05g01195 05 6200726 6204385 BWGD