Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00427 ATGGATGAAGATATTACTGCATGTGAAAGTAACAAGGCAGGATCAGCACGTCATGCATTAGTTGTAGGTCCTGAAAATATTGAAGGAAACACTGATAGACAGCAAGATTCAGCGAAGAGCAAGGCCAAAGATGAAAGGAACAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTGTGGATCAACTATTGATGTTTGTCGGGACAATAGCTGCTGCTGGAACTGGAATCTGTATGCCCATGATGGTTATAATTACGGGAGAAATGGTAGATGCATTTGGAGGAAATGTTAACACCAAACAAATTGTTCAAGAAGTTTCCAAGGTGTCTCAGAGTTTCGCATACCTGGCTGTGGGTTCCTTTGTTGCATCAGCTCTGCAGGTGGCTTGCTGGATGGTAACTGGGGAGAGACAGTCAGCACGAATAAGAAGCTTATACCTCAAAGCAATTTTAAGGCAAGATATTGGCTTCTTTGATAAGGAAACAAACAGCGGTGATGTTGTTGGGAGGATGTCCGGTGACACCGTTCTTATTCAAGAAGCCATGGGCGAGAAGGTAGGGAGGTTCATACAGTTGGTGGTTACTTTTTCTGGAGGTTTTATCGTAGCATTCATCAAGGGTTGGCTTATGACCCTTGTTCTGCTAGCTTGTGTTCCACCCCTTATCTTCTCAGGTGCCATAATAAGCTTTATTGTTGCAAAGGTGACTACCCGTGGCCAAGCAGCTTATTCTGCTGCAGCGATTGTGGTAGAGCAGACAATCAGCTCAATTCGAACTGTTGCATCATTTACTGGCGAGAAGCAAGCTATAGCTAAATACAATCAATCCTTAACTAAAGCCTACAGAGCTGGCGTGCAAGGGGGAGTGGCTGCTGGTTTGGGTCTCGGTTTTGTTCGTGTAATTGTTTACAGCAGCTATGCATTGGCCATATGGTTTGGAGGGAAGATGATATTAGAGAAAGGATATACAGGAGGGCAAGTCATCACTGTATTTTTTGCAGTATTGATGGGCTCCTTgtCTCTTGGACAGGCATCTCCAAGCTTAACTGCGTTTGCTGCTGGACAAGCTGCAGCATTTAAAATGCTTGAGACAATTAACAGGAAGCCTGACATTGATGCATATGATAGTGCAGGTCGACAGCCAGAAGATATTCGAGGAGATATAGAACTGAAGGAAGTTTTCTTTAGTTACCCTGCAAGACCAGAAGAACATATATTCAACGGGTTTAATCTTTCAATACCGAGTGGTACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGTTGGTGAAGTTCTCATAGATGGTATCAATATCATAGAGTATCAGTTGAAATGcatcagaaagaaaataggcCTCGTCAGCCAGGAACCAGTTTTGTTCTCTTGTAGCATTAAAGAGAACATTGCCTATGGGAAGGATGGTGCAACAGATGAAGAAATAAGAGCTGCAGCAGAGCTTGCAAATGCCGCTAAATTCATTGATAAACTGCCTCAGGGACTAGACACATCGGTTGGTGAGCGTGGAACACAGCTTTCTGGGGGTCAAAAGCAGAGAATTGCTATAGCAAGAGCAATTCTGAAAGACCCAAAAATTCTACTTCTTGACGAAGCAACGAGTGCCCTTGATGCTGAATCAGAAAGAGTAGTGCAGGAGACACTAGAGAGAATCATGATAAACCGAACAACTCTAATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATATTATTGCTGTTATtcacaaaggaaaaatagttGAGAGAGGTTCACATGCTGAGCTCACTAACGATCCTGACGGAGCCTATAGCCAGCTCATTAGATTGCAAGAAATTAGAATGGAGTCAAAACAGAATGGCACAAATGACACAGACAGGCCAGAAAGCTTTGTAGATTCTGGACAACAATCAAGTCAACGGTTTTCTTTCCTAAGATCTGTAAGTCAGGGATCATCTGGAACCGGAAATAGCAGTCGTCACTCATTCCAAATTTCACATGCTGTCCCTGGTCTTTTGGAAACAACAACAGGAAGCCCTGAAACTCCTTCAGCAGTATCACATCCACCTATAAAGGTCCCCCTTCTCCGCCTGGCGTATCTTAACAAGCCAGAGATCCCAGCGTTACTTACAGGAAGTGTAGCTGCAGCAGCAAGTGGAGCAATATTACCCATTCTAGCATTGCTAACTTCCAGTATGATAACTACCTTCTATGAGCCCGCAAATGAACTCCGTAAAGATTCTAAATTCTgggcatatatatttattgccCTTGGTGCTGCAGCCTTGTTAATTGAGCCAACAAAGTCATACTTTTTTGCTGTGGCTGGCTGTAAGTTGATAAAAAGGGTTCGGCTAATGTGTTTTGAGAAAGTTATTCATATGGAAGTAAGTTGGTTTGACAAAGCTGAGCATTCAAGCGGAGTACTTGGAGCAAGGCTCTCAACTGATGCCGCTTCTATTAGACTTTTGCTTGGGGATTCACTTGCTTTGCTGGTTCAGGATATTTCAACGGCTATTACTGCCTTGGTAATTGCCTTAGAGGCAAATTGGCAACTTTCCCTTATCATTCTTGTTTTGCTACCTCTACTAACAGTAAATGGATATTTGCAAGTACGGTCCATGAAAGGATTCAGCGCAGATGCAAAGGTTTGTTCCTA 2711 0.4212 MDEDITACESNKAGSARHALVVGPENIEGNTDRQQDSAKSKAKDERNKTVPFYKLFSFADSVDQLLMFVGTIAAAGTGICMPMMVIITGEMVDAFGGNVNTKQIVQEVSKVSQSFAYLAVGSFVASALQVACWMVTGERQSARIRSLYLKAILRQDIGFFDKETNSGDVVGRMSGDTVLIQEAMGEKVGRFIQLVVTFSGGFIVAFIKGWLMTLVLLACVPPLIFSGAIISFIVAKVTTRGQAAYSAAAIVVEQTISSIRTVASFTGEKQAIAKYNQSLTKAYRAGVQGGVAAGLGLGFVRVIVYSSYALAIWFGGKMILEKGYTGGQVITVFFAVLMGSLSLGQASPSLTAFAAGQAAAFKMLETINRKPDIDAYDSAGRQPEDIRGDIELKEVFFSYPARPEEHIFNGFNLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQVGEVLIDGINIIEYQLKCIRKKIGLVSQEPVLFSCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTSVGERGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQETLERIMINRTTLIVAHRLSTIRNADIIAVIHKGKIVERGSHAELTNDPDGAYSQLIRLQEIRMESKQNGTNDTDRPESFVDSGQQSSQRFSFLRSVSQGSSGTGNSSRHSFQISHAVPGLLETTTGSPETPSAVSHPPIKVPLLRLAYLNKPEIPALLTGSVAAAASGAILPILALLTSSMITTFYEPANELRKDSKFWAYIFIALGAAALLIEPTKSYFFAVAGCKLIKRVRLMCFEKVIHMEVSWFDKAEHSSGVLGARLSTDAASIRLLLGDSLALLVQDISTAITALVIALEANWQLSLIILVLLPLLTVNGYLQVRSMKGFSADAKVCS 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00427 903 Gene3D - 380 629 IPR027417 -
Bva06g00427 903 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 727 903 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva06g00427 903 Gene3D ABC transporter type 1, transmembrane domain 54 639 IPR036640 GO:0005524|GO:0016021
Bva06g00427 903 Pfam ABC transporter transmembrane region 730 898 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva06g00427 903 Pfam ABC transporter transmembrane region 67 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva06g00427 903 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 34 900 - -
Bva06g00427 903 ProSitePatterns ABC transporters family signature. 529 543 IPR017871 GO:0005524
Bva06g00427 903 CDD ABC_MTABC3_MDL1_MDL2 390 628 - -
Bva06g00427 903 Gene3D ABC transporter type 1, transmembrane domain 710 900 IPR036640 GO:0005524|GO:0016021
Bva06g00427 903 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 351 - -
Bva06g00427 903 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 68 355 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva06g00427 903 SMART AAA_5 417 589 IPR003593 -
Bva06g00427 903 Pfam ABC transporter 409 557 IPR003439 GO:0005524
Bva06g00427 903 SUPERFAMILY ABC transporter transmembrane region 54 374 IPR036640 GO:0005524|GO:0016021
Bva06g00427 903 MobiDBLite consensus disorder prediction 1 44 - -
Bva06g00427 903 PANTHER - 34 900 - -
Bva06g00427 903 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 390 626 IPR003439 GO:0005524
Bva06g00427 903 SUPERFAMILY ABC transporter transmembrane region 714 898 IPR036640 GO:0005524|GO:0016021
Bva06g00427 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00427 Bva-Chr6 5197931 5202171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00427 48 898 Calmodulin-binding Proteins AT2G36910 41.387 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00427 K05658 - gmx:100777713 1212.21