Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00398 ATGGAGGCTAAATTTGGGGGGAAGAATCAGTATGTCTATGGACCTGTGGTGCCAGAAATAAAGGCAGTTGGGAAGAGGAGTTTGGAATGGGATTTGAATGACTGGAAATGGGACGGTGATCTTTTTACTGCTAGTCCACTAAATTCAGCTCCATCAGATTGTAGGAGTCGGCAATTGTTCCCAATTAATCCAGAAATTCCCGCAAAAGCTAATATATCCAACAGTTTGTCCTCTGGTTCGGATGATAGCAACCCAGGgaagggaaagagagaattgGAAAAAAGGAGGCGAGCTGTTACGGGTGAAGAGGAAGAGCTGACTGATGAAGCCGGTTCTCTTAATTTAAACCTTGGTGGCCAAATTTATCCTATCATGGAAGGGGATGTAAAGAGTGGGAAGAAGACAAAGATAGTTGGGACTACGTCAAACCGTTCGGTTTGTCAGGTGGAAGATTGTAGAGCTGATCTTAGTAATGCAAAGGATTACCATCGACGACACAAGGTCTGTGACATGCATTCTAAGGCAACAAAGGCACTGGTGGGAAATGTTATGCAGCGTTTCTGTCAGCAGTGTAGCAGATTTCATGTTCTTCAAGAATTCGATGAAGGGAAGAGAAGTTGCCGTAGGCGTCTAGCAGGCCACAATAGGAGGAGGAGAAAAACGCATCCTGATACTGTAGCAAACGGGGCTCCTTG 695 0.4403 MEAKFGGKNQYVYGPVVPEIKAVGKRSLEWDLNDWKWDGDLFTASPLNSAPSDCRSRQLFPINPEIPAKANISNSLSSGSDDSNPGKGKRELEKRRRAVTGEEEELTDEAGSLNLNLGGQIYPIMEGDVKSGKKTKIVGTTSNRSVCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVANGAP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00398 231 Coils Coil 89 109 - -
Bva06g00398 231 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Bva06g00398 231 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 230 IPR044817 GO:0003677
Bva06g00398 231 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Bva06g00398 231 MobiDBLite consensus disorder prediction 70 110 - -
Bva06g00398 231 Pfam SBP domain 147 220 IPR004333 GO:0003677
Bva06g00398 231 MobiDBLite consensus disorder prediction 84 104 - -
Bva06g00398 231 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 230 - -
Bva06g00398 231 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00398 Bva-Chr6 5068731 5070275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00398 1 230 SBP-box Gene Family AT3G60030 53.617 2.54e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva06g00398 SBP 8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00398 - - qsu:111997723 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01213 05 6310067 6316323 Bva06g00398 06 5068731 5070275 BWGD