Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00360 ATGGATGGAAAAGGGAGAGGAAACAACGCCGGCAACACCATCCTGAGCGACGACGAGATGGACCTCCGGCGAGGCCCGTGGACCGTCGATGAGGACCTCACCCTCATCAATTACATTGCCAATCACGGCGAAGGTCGCTGGAACTCCCTTGCCCGCTCCGCCGGTCTCAAACGAACTGGCAAGAGCTGCAGATTGAGGTGGCTTAACTATCTCCGCCCAGATGTTCGACGTGGAAATATCTCCCTAGAAGAACAGCTCCTAATTCTTGATCTCCATTCTCGCTGGGGAAACCGATGGTCCAAAATTGCCCAGTACTTGCCTGGAAGAACTGACAATGAGATCAAGAACTATTGGAGAACCCGAGTTCAAAAGCACGCCAAGCAACTGAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGTTACCTTTGGATGCCAAGGCTGGTGGAGCGAATTCAAGCCGCCGCAGCCTCCGCTGCTACTGCTGCCCCCACCACCGCCACTGTGGGTTCACCGACATTATCTACCACCACCACCGTCACTGCCAACACCGCATACAACTATAATAACAAcctcaataataataacaattttgagGTACACAATGGAAACATGGTGTTCGGGGGATCCCAGGTTACACAAAGTTACACTCCAGAGAATAGTAGCACAGCTGCTTCGTCGGACTCGTTTGGGACCCAGGTTTCACCTGTCTCGGATTTGACGGAATATTACAGTGTCCCGGTTAGTAACAACAATAACGCTAACCCGGATTACTATCAACCCGCTCACGTCAGCTACTTGGACTGCATCACCAGCCCCACAGGGCTCTACTCTCACGGGCTGGATTTCCAAACCATGGAGCCAAACAAACAGTGGATTCAGAGTGGGGATACATCGGATAATTTCTGGAATGTTGAGGACATGTTGTTTTTACAGCAGCAACTCTTGAACGGCAACATGTG 968 0.501 MDGKGRGNNAGNTILSDDEMDLRRGPWTVDEDLTLINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNISLEEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAASAATAAPTTATVGSPTLSTTTTVTANTAYNYNNNLNNNNNFEVHNGNMVFGGSQVTQSYTPENSSTAASSDSFGTQVSPVSDLTEYYSVPVSNNNNANPDYYQPAHVSYLDCITSPTGLYSHGLDFQTMEPNKQWIQSGDTSDNFWNVEDMLFLQQQLLNGNM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00360 322 Gene3D - 21 77 - -
Bva06g00360 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Bva06g00360 322 CDD SANT 81 120 IPR001005 -
Bva06g00360 322 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Bva06g00360 322 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Bva06g00360 322 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Bva06g00360 322 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 317 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva06g00360 322 Gene3D - 80 144 - -
Bva06g00360 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Bva06g00360 322 CDD SANT 26 71 IPR001005 -
Bva06g00360 322 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Bva06g00360 322 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Bva06g00360 322 SMART sant 76 124 IPR001005 -
Bva06g00360 322 SMART sant 23 73 IPR001005 -
Bva06g00360 322 PANTHER MYB TRANSCRIPTION FACTOR 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00360 Bva-Chr6 4785913 4787856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00360 1 313 MYB Transcription Factor Family AT3G06490 55.689 7.02e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g00360 Myb_DNA-binding 3.2e-15 CL0123