Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00313 ATGGGAACCACGCCAGAAGAAGAGATTCTCAAGAAGATCGAAGAGCTTGAGGTGGGTCACGCCCACCTCCAGCAAGAAATGTCCAAGCTTAAGCACTCTAGCGATGCCAAAGTGGAACATGGTCATCGTCAGAGGTCTCATTCGATATCACCGCAGCGCTCGAGATTGGCTCCGCCGAGGAGGAGAGCTGGAGGTGGCGGATTGGATGGACAAGCAGCGTGGAAGAAAGGATCGGCTTCGTTTAAACATTCGTCCCCGTTGCAGAGGGAGAGTCGTAGTGGTGTTCCTCAAAATGATGGAGATGGTGGCGTAGTCAGCGGCCCTTCAGCTGTGAAATTTTCTGATAAGCAGTATCTGAATATTTTGCAGTCAATGGGACAATCGCTTCATATCTTGGATCTTAATTGTCGTATAATATACTGGAACCGTACTGCTGAAAATTTATATGGTTATTCAGCAAGGGAAGCCCTTGGCCAGGATGGCATTGAACTGCTCTTAGACCCCAGGGATTTCGCTTATGCCAATGATATTATCAACCGTATTGTAATGGGAGAGAGCTGGACTGGGCAATTCCCTGTCAAGAATAAGATGGGAGAGAAGTTTGTAGCTTTAGTAACCAATACTCCTTTATATGACGATGATGGAAGTTTGATTGGGATTGTTTGTGTCTCAAGTGATTCACGGCTGTTTCTTGAAACGAGAATTCCTTTTTTGGTTCCGAAGCATAGTGAAGCAGATTCAAGCTCCAGCCATCCTAGAAGCAGTGTTGCAACCAAACTTGGTCTGGACTCTCAACAGCCTCTTCAAGTTGCTCTAGCAtcgaaaatttcaaatttgGCATCAAAAGTGAGTAACAAAGTTAAGTCGAGAATTCGAACAGGAGAAAATAGTGTGGATCGTGAAGGTGGGAGTGGAGAAAGTCATCATTCTGAGCATTGTTTCTCTGATTCTGTTGTAGACCAGAGAGAGGATGCTAATTCCAGTGGAGCAAGTACACCCAGAGGGGATGTACAGCCATCTCCTTTTGGTGCATTCTCTCATGTTGAAGAGAAATCACAAGGAAAAACTTTGAGAGACTGTGGTGATGAAAGCGAAGGAAAACCTATTCACAAGATCATAACTTCCAAGGCTGAAGCATGGATTCACAAGAAAACATTATCATGGCCATGGAAAGGGAATGAGCGAGAAGGGTCAGAAGCAAGGAGTGTGCGTGTTCCTTGGCTTTGGCTGCAGAATGATCAAGAAAACGAGCCAGTTCATCAGAAGAGCCTTTCTTCTGGGGTGAAGTCAGAAAGCCAACCAGCTGAAAGTAATCGACCTGTTAATACTGAGGCCTCAGGATCCTGGTCCTTGTCCTTCAATGTCAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGCAGTGCCATCAATAATAAAGTGGACATGGATACTGATTGCTTGGATTATGAAATCTTGTGGGAGGACTTGACAATTGGAGAACCAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTTTGTGGTATGGATCGGATGTTGCTGTCAAGGTATTCTCCAAGCAAGAATACTCAGACGATGCTATAATGTCCTTCAGGCAAGAGGTGTCTGTTATGAAAAGACTTAGGCATCCGAACGTTCTTCTCTTCATGGGGGCGGTGACTTCACCCGAACGTCTCTGCATTGTGACAGAGTTCCTCCCACGAGGAAGCTTGTTTCGCTTACTCCAGAGGAATGCAGCCAAGCTGGACTGGCGACGACGAGTACACATGGCCTTGGATATTGCAAGAGGTGTAAATTATCTTCATCACTGCAGTCCGCCTATCATTCATCGAGATTTGAAATCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGgtgattttggtctttcgcgTCTTAAGCACGAAACATTTCTCACAACCAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCGGAAGTTCTTCGTAATGAACCCTCAGATGAGAAGTCTGATGTATATAGCTTTGGAGTCATATTGTGGGAGCTTGCAACTGAAAAGATCCCATGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGTTTCATGAACCAGCAGCTAGAAATTCCGAAAGATGTTGATCCAACGTGGACTGCTATAATTGAGAGCTGCTGGCATAGTGATCCAGCTTGCCGGCCGACATTCCAGCAATTGTTGGAAAGACTTAGAGATCTTCAGAGACGGTATCTGACTCAATTCCAGGCAGCCCGAGCTGCCGGTGGGGAAAACACCCAAAAGGAATCATA 2312 0.4524 MGTTPEEEILKKIEELEVGHAHLQQEMSKLKHSSDAKVEHGHRQRSHSISPQRSRLAPPRRRAGGGGLDGQAAWKKGSASFKHSSPLQRESRSGVPQNDGDGGVVSGPSAVKFSDKQYLNILQSMGQSLHILDLNCRIIYWNRTAENLYGYSAREALGQDGIELLLDPRDFAYANDIINRIVMGESWTGQFPVKNKMGEKFVALVTNTPLYDDDGSLIGIVCVSSDSRLFLETRIPFLVPKHSEADSSSSHPRSSVATKLGLDSQQPLQVALASKISNLASKVSNKVKSRIRTGENSVDREGGSGESHHSEHCFSDSVVDQREDANSSGASTPRGDVQPSPFGAFSHVEEKSQGKTLRDCGDESEGKPIHKIITSKAEAWIHKKTLSWPWKGNEREGSEARSVRVPWLWLQNDQENEPVHQKSLSSGVKSESQPAESNRPVNTEASGSWSLSFNVNSTSSASSCGSAGSSAINNKVDMDTDCLDYEILWEDLTIGEPIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDAIMSFRQEVSVMKRLRHPNVLLFMGAVTSPERLCIVTEFLPRGSLFRLLQRNAAKLDWRRRVHMALDIARGVNYLHHCSPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETFLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSMQVIGAVGFMNQQLEIPKDVDPTWTAIIESCWHSDPACRPTFQQLLERLRDLQRRYLTQFQAARAAGGENTQKES 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00313 770 MobiDBLite consensus disorder prediction 351 366 - -
Bva06g00313 770 SUPERFAMILY PYP-like sensor domain (PAS domain) 120 223 IPR035965 -
Bva06g00313 770 MobiDBLite consensus disorder prediction 7 46 - -
Bva06g00313 770 SMART serkin_6 492 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g00313 770 Gene3D Transferase(Phosphotransferase) domain 1 571 757 - -
Bva06g00313 770 MobiDBLite consensus disorder prediction 320 335 - -
Bva06g00313 770 Gene3D PAS domain 127 229 - -
Bva06g00313 770 PRINTS Tyrosine kinase catalytic domain signature 671 693 IPR001245 GO:0004672|GO:0006468
Bva06g00313 770 PRINTS Tyrosine kinase catalytic domain signature 715 737 IPR001245 GO:0004672|GO:0006468
Bva06g00313 770 PRINTS Tyrosine kinase catalytic domain signature 652 662 IPR001245 GO:0004672|GO:0006468
Bva06g00313 770 PRINTS Tyrosine kinase catalytic domain signature 605 623 IPR001245 GO:0004672|GO:0006468
Bva06g00313 770 PRINTS Tyrosine kinase catalytic domain signature 566 579 IPR001245 GO:0004672|GO:0006468
Bva06g00313 770 MobiDBLite consensus disorder prediction 242 261 - -
Bva06g00313 770 Pfam PAS domain 131 226 IPR000014 -
Bva06g00313 770 MobiDBLite consensus disorder prediction 243 261 - -
Bva06g00313 770 CDD STKc_MAP3K-like 498 744 - -
Bva06g00313 770 MobiDBLite consensus disorder prediction 285 366 - -
Bva06g00313 770 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 30 768 - -
Bva06g00313 770 SMART pas_2 116 183 IPR000014 -
Bva06g00313 770 MobiDBLite consensus disorder prediction 1 107 - -
Bva06g00313 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Bva06g00313 770 SUPERFAMILY Protein kinase-like (PK-like) 480 744 IPR011009 -
Bva06g00313 770 ProSiteProfiles Protein kinase domain profile. 492 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g00313 770 ProSiteProfiles PAS repeat profile. 114 185 IPR000014 -
Bva06g00313 770 MobiDBLite consensus disorder prediction 81 95 - -
Bva06g00313 770 CDD PAS 125 226 IPR000014 -
Bva06g00313 770 Gene3D Phosphorylase Kinase; domain 1 485 569 - -
Bva06g00313 770 MobiDBLite consensus disorder prediction 414 446 - -
Bva06g00313 770 Pfam Protein tyrosine and serine/threonine kinase 492 744 IPR001245 GO:0004672|GO:0006468
Bva06g00313 770 TIGRFAM sensory_box: PAS domain S-box protein 114 226 IPR000014 -
Bva06g00313 770 Coils Coil 6 33 - -
Bva06g00313 770 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 768 - -
Bva06g00313 770 MobiDBLite consensus disorder prediction 288 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00313 Bva-Chr6 4534044 4543825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00313 1 766 MAP Kinase Kinase Kinase AT3G06620 63.104 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Bva06g00313 PK_Tyr_Ser-Thr 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00313 - - gmx:100800867 1149.42