Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00312 ATGGCTTCAGCTAGCAGAGCAGCAAATTCGGTTCGCCAGGTTCACTCTTCGGCCACAGGCACAAGCCATAGGAGAGGCCAAAATACAGAGTCAATGAGCAAAGCAATTGCTCAGTACACCCAGGATGCTCACCTTCATGCCGTCTTCGAGCAATCTGGTGAGTCTGGCAGGTCCTTTGACTACTCAGAATCTTTAAGAACCACAAACCAGTCTGTCCCAGAGCAGCAAATTAGCGCTTACCTATTGAAAATTCAGAGAGGTGGGTCTATTCAACCTTTTGGGTGTATGATTGCCGTCGACGAAGCCACTTTTCGAGTTCTTGGTTACAGCGAAAACGCTTGTGATTTGCTGGGTATTACTCCTCAGTCGGTGCCGAATCTCGAAAAGGATGAAATTCTCTCGGTTGGAACTGATGTTCGCACGCTTTTCACGCACTCGAGTGCGGTTCTTCTTGAAAAGGCATTTGGGGCACGGGAAATCACCTTGTTGAACCCCATTTGGATTCATTCTAAGAATTCGGGGAAACCCTTTTATGCGATTTTGCATAGAATTGATGttgggattgtgattgatttgGAGCCTGCAAGGACAGAGGACCCTGCCCTGTCCATTGCTGGGGCGGTTCAATCTCAGAAGCTAGCGGTGCGAGCAATTTCACAGCTGCAGTCTCTTCCTGGTGGAGATATAAAGCTTTTATGTGATACTGTAGTTGAGAGTGTTAGAGTGCTTACGGGGTATGATAGGGTGATGGTCTATAAATTTCACGAGGATGAGCATGGTGAGGTTGTAGCAGAGAGTAAGAGGGCAGATTTTGAGCCATATTTAGGTTTGCATTATCCTTCTACAGATATTCCTCAGGCTTCAAGGTTTTTGTTCAAGCAGAACCGAGTTAGGATGATTGTGGACTGCCATGCCACTCCTGTTCGGGTGATCCAGGACGAAGGGCTTATGCAGTCTCTGTCTTTGGTTGGATCAACACTTCGTGCTCCACATGGTTGCCATGCCCAGTATATGGCCAATATGGGTTCAATTGCTTCATTGGCAATGGCTGTCATAATCAATGGGAATGATGAGGAAGCCATTGGGGGTCGCAACACAATGAAATTATGGGGTCTGGTTGTTTGCCATCATACTTCTGCTCGATATATTCCTTTCCCCATACGCTATGCTTGTGAGTTCCTTATGCAGGCCTTTGGCCTCCAACTGAATATGGAACTTCAATTGGCATCACAATTATTGGAAAAACGTGTTTTAAGAACTCAAACTCTCCTTTGTGACATGCTTCTTCGAGACTCTCCTACAGCTATTGTTACCCAAAGCCCTAGTATTATGGACCTTGTGAAGTGTGATGGAGCAGCTCTCTACACTCAAGGGAACTATTATCCATTAGGTGTCAGTCCAACCGAATCCCAAATTAAGGATATTATAGAGTGGTTGTTGGCCTTCCATGAAGATTCAACGGGTTTAAGTACTGATAGTCTGGCTGATGCTGGGTATCCTGGAGCCGCCTCTCTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACCAAAAAGGATTTTCTATTCTGGTTCCGATCTCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCAGAGGACAGGGATGATGGACAGAGAATGCACCCACGTTCTTCATTCAAGGCGTTTCTGGAAGTGGTAAAAAGCCGTAGTATACCTTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACTCATTTAGAGATGCTGAGCAAAGCAATTCTAAGGCTATAATACATTCTCAACTTGGGGGCCTGGAATTGCAAGGGTTGGATGAACTTAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGACACAGCTACTGCTCCCATATTTGCCGTAGATGTTGATGGTTGCATAAATGGGTGGAATGAAAAGGTTGCAGAATTGACTGGACTTTCAATTGAGGATGCTATGGGAAAGTCTTTGGCTCATGATCTAGTGTATAAGGAGTCTGAAGAAACTGTAGAAAGACTGCTTTCTCGCGCTTTAAGAGGTGACGAGGATAAGAATGTTGAGATAAAAATGAGGACATTTGGCCCAGAACTTCATAAGAAGGCAATTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGgattatacaaataatatagttGGAGTATGCTTTGTTGGTCAAGATATTACTGGTCAAAAAGTGGTAATGGACAAGTTTATCCGCATACAAGGGGACTACAAGGCTATTGTTCATAATCCAAGTCCTTTGATCCCTCCCATTTTTGCTTCGGATGATAACACATGCTGCTCAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGCCAGTGGAGAAGTCATGGGAAAAATGTTGGTAGGAGAGGTTTTTGGTAGTTGCTGTGGACTGAAGGGTCCAGATGCTCTAACCAAGTTCATGATTGTCTTGCACAATGCACTTGGTGGACAGGATACAGATAAATTCGTGTTTTCATTCCTTAATCGGAATGGAAAATACATTCAAGCTCTCTTGACTGCAAATAAAAGGGTTAACACAGAGGGTCAGATTATCGGGGCTTTCTGCTTCTTGCAAATTGCAAGCCCTGAACTTCAACAGGCTCTGAAAGTCCAGAAGGAACAGGAGAAGAAATGCTTGGCTAGGATGAAAGAGTTAGCTTACATTTGCCAGGAAATAAAGAATCCACTGAGTGGCATACGGTTCACAAACTCTCTTTTGCAGGCTACTGATTTGACTGATGATCAGAAACAGTTTCTTGAGACTAGTACTGCTTGTGGAAAGCAGATGTTGAAGATCATACAAGATGTTGATCTGGAGAGCATTGAGGATGGGTCCTTGGAGCTTGAAAAGGGAGAATTCTTACTTGGAAGTGTCATTAATGCGGTTGTTAGCCAAGTTATGTTATTGCTGAGAGAAAGAAATCTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTTTCCGTTTATGGTGATCAGTTGAGAATTCAACAGGTCTTGGCTGATTTCTTGTTGAATATGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTTTGTCCaagattaaaacaaatttctgATGAACGTACGCTTCTTCTTGCTGAATTCAGGATTGTATGTCCTGGTGAAGGTCTTCCTTCTGAATTAATTCAAGACATGTTCCATAACAGTTGGTGGGTGAGTCAAGAAGGCTTGGGGCTGAGCATGTGCAGGAAGATTCTAAAGCTAATGAATGGTGAAGTCCAGTATATTAGGGAGTCCGAGCGATGCTGCTTCTTAATTATTCTTGAACTGCCCGTGACGCTGAGAGGCTCGAAGAGTGTGGAGTA 3392 0.4351 MASASRAANSVRQVHSSATGTSHRRGQNTESMSKAIAQYTQDAHLHAVFEQSGESGRSFDYSESLRTTNQSVPEQQISAYLLKIQRGGSIQPFGCMIAVDEATFRVLGYSENACDLLGITPQSVPNLEKDEILSVGTDVRTLFTHSSAVLLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRVLTGYDRVMVYKFHEDEHGEVVAESKRADFEPYLGLHYPSTDIPQASRFLFKQNRVRMIVDCHATPVRVIQDEGLMQSLSLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEAIGGRNTMKLWGLVVCHHTSARYIPFPIRYACEFLMQAFGLQLNMELQLASQLLEKRVLRTQTLLCDMLLRDSPTAIVTQSPSIMDLVKCDGAALYTQGNYYPLGVSPTESQIKDIIEWLLAFHEDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDRDDGQRMHPRSSFKAFLEVVKSRSIPWENAEMDAIHSLQLILRDSFRDAEQSNSKAIIHSQLGGLELQGLDELSSVAREMVRLIDTATAPIFAVDVDGCINGWNEKVAELTGLSIEDAMGKSLAHDLVYKESEETVERLLSRALRGDEDKNVEIKMRTFGPELHKKAIFVVVNACSSKDYTNNIVGVCFVGQDITGQKVVMDKFIRIQGDYKAIVHNPSPLIPPIFASDDNTCCSEWNTAMEKLTGWASGEVMGKMLVGEVFGSCCGLKGPDALTKFMIVLHNALGGQDTDKFVFSFLNRNGKYIQALLTANKRVNTEGQIIGAFCFLQIASPELQQALKVQKEQEKKCLARMKELAYICQEIKNPLSGIRFTNSLLQATDLTDDQKQFLETSTACGKQMLKIIQDVDLESIEDGSLELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTFSVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVCPRLKQISDERTLLLAEFRIVCPGEGLPSELIQDMFHNSWWVSQEGLGLSMCRKILKLMNGEVQYIRESERCCFLIILELPVTLRGSKSVE 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00312 1130 Gene3D - 411 584 IPR043150 -
Bva06g00312 1130 SMART HKATPase_4 1008 1121 IPR003594 -
Bva06g00312 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Bva06g00312 1130 Gene3D PAS domain 768 876 - -
Bva06g00312 1130 Pfam Phytochrome region 419 593 IPR013515 GO:0006355|GO:0009584
Bva06g00312 1130 Pfam PAS fold 79 195 IPR013654 GO:0006355
Bva06g00312 1130 PIRSF Phytochrome_conventional 11 1128 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bva06g00312 1130 Gene3D - 209 567 IPR029016 -
Bva06g00312 1130 SUPERFAMILY GAF domain-like 414 591 - -
Bva06g00312 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 14 1124 - -
Bva06g00312 1130 Gene3D - 960 1124 IPR036890 -
Bva06g00312 1130 MobiDBLite consensus disorder prediction 1 31 - -
Bva06g00312 1130 CDD HisKA 896 952 IPR003661 GO:0000155|GO:0007165
Bva06g00312 1130 SMART gaf_1 228 416 IPR003018 GO:0005515
Bva06g00312 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 396 IPR016132 -
Bva06g00312 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1008 1119 IPR003594 -
Bva06g00312 1130 CDD PAS 766 874 IPR000014 -
Bva06g00312 1130 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Bva06g00312 1130 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 952 IPR036097 GO:0000155|GO:0007165
Bva06g00312 1130 SMART HisKA_10 896 960 IPR003661 GO:0000155|GO:0007165
Bva06g00312 1130 PANTHER PHYTOCHROME 14 1124 - -
Bva06g00312 1130 Gene3D PAS domain 619 743 - -
Bva06g00312 1130 CDD HATPase_Phy-like 1007 1119 IPR044767 -
Bva06g00312 1130 Pfam GAF domain 228 406 IPR003018 GO:0005515
Bva06g00312 1130 ProSiteProfiles Histidine kinase domain profile. 903 1123 IPR005467 -
Bva06g00312 1130 CDD PAS 632 703 IPR000014 -
Bva06g00312 1130 Pfam PAS fold 755 874 IPR013767 GO:0006355
Bva06g00312 1130 Pfam PAS fold 624 739 IPR013767 GO:0006355
Bva06g00312 1130 TIGRFAM sensory_box: PAS domain S-box protein 628 743 IPR000014 -
Bva06g00312 1130 PRINTS Phytochrome signature 521 540 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 643 658 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 436 456 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 554 572 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 624 640 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355|GO:0009584
Bva06g00312 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 196 IPR035965 -
Bva06g00312 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Bva06g00312 1130 SUPERFAMILY GAF domain-like 208 403 - -
Bva06g00312 1130 Pfam His Kinase A (phospho-acceptor) domain 900 960 IPR003661 GO:0000155|GO:0007165
Bva06g00312 1130 SMART pas_2 754 824 IPR000014 -
Bva06g00312 1130 SMART pas_2 623 690 IPR000014 -
Bva06g00312 1130 Gene3D - 877 959 - -
Bva06g00312 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 971 1117 IPR036890 -
Bva06g00312 1130 Gene3D PAS domain 83 331 - -
Bva06g00312 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 873 IPR035965 -
Bva06g00312 1130 ProSiteProfiles PAS repeat profile. 621 692 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00312 Bva-Chr6 4524895 4531477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00312 2 1123 Histidine Kinase Gene Family AT4G16250 73.522 0.0 1747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00312 K12121 - zju:107418995 1966.04