Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00272 ATGGGGAGACAACCTTGCTGTGAGAAAGTAGGGTTGAAGAAAGGAAGATGGACTGCAGAAGAGGATAGGATCTTGACACAGTACATCGAAGAAAATGGTGAAGGCTCTTGGAGAAACTTACCCAAGAATGCAGGTTTGTTGAGGTGTGGGAAGAGTTGCAGATTGAGATGGATCAACTACTTGAGAGCAGATGTGAAGAGAGGCAACATTACTCCTCAAGAGGAAGAGATCATTGTCAAGCTGCATGCTATTCTTGGCAATAGGTGGTCTGTAATAGCAGGTCATTTACCAGGAAGAACCGACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGGAGGAAAATTTACTGCTTCATGAAATCTTCAAATGAGTTCTTGCCACCCATTGACATGGCTGCTCTGAGCGCCGCCGCCAGTTCATCAAAGCGAAGAGGTGGCCGAGGGCGAACAAGTCAACCATGCATGCAAGACAATAACATGGATCTGAGCCAAAAGAATGCAAGCATGTCCGAGGGAACAAATGTCGGAGAAGTTGATGAATTTCCCATACCAAGTTCTGGGTCATGGAGCCAAGATGAATCCAGAGAAGGCATTGGTGGGGATGCATCATGGCCCAACAATAACATGAATGGACAAATTGATCAGGAGTTGGGACCATATCAATGGCTGGatgatgaaattatgaaacttAGTTATATGTTTGAAAGTGGAGTACTTGTGAACCCAAGTGGGTGTGTAGCAAATGAAGATCAactgaataaaaataacagaGAATACTGTGGAATGATGGATGATGAGATGGAGATGATGATGGGAATGAGCTGTGAGGAGAGCAGTAAGAGTGATGTTTGGAGCTCATCAAATGCAGGGAGTAGTGGGGAATGGTACAATAGTAACTCTTCGTCATCAGTGAATTGTGGGAATGATTATCAGTGGCTTGATAATTGGGATTATCGTGAAGAAGGAAACGAAATGGACACTGGTTTGTGGGGTTATGGCACTGCTGCTGAATTAGATATCTTCCAATATAGGTA 1037 0.4262 MGRQPCCEKVGLKKGRWTAEEDRILTQYIEENGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEEIIVKLHAILGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSSNEFLPPIDMAALSAAASSSKRRGGRGRTSQPCMQDNNMDLSQKNASMSEGTNVGEVDEFPIPSSGSWSQDESREGIGGDASWPNNNMNGQIDQELGPYQWLDDEIMKLSYMFESGVLVNPSGCVANEDQLNKNNREYCGMMDDEMEMMMGMSCEESSKSDVWSSSNAGSSGEWYNSNSSSSVNCGNDYQWLDNWDYREEGNEMDTGLWGYGTAAELDIFQYR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00272 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva06g00272 345 MobiDBLite consensus disorder prediction 145 174 - -
Bva06g00272 345 CDD SANT 16 61 IPR001005 -
Bva06g00272 345 Gene3D - 13 66 - -
Bva06g00272 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva06g00272 345 SMART sant 66 114 IPR001005 -
Bva06g00272 345 SMART sant 13 63 IPR001005 -
Bva06g00272 345 Gene3D - 71 116 - -
Bva06g00272 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva06g00272 345 PANTHER MYB TRANSCRIPTION FACTOR 2 296 - -
Bva06g00272 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva06g00272 345 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 296 - -
Bva06g00272 345 CDD SANT 71 112 IPR001005 -
Bva06g00272 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva06g00272 345 MobiDBLite consensus disorder prediction 138 209 - -
Bva06g00272 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva06g00272 345 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00272 Bva-Chr6 4304038 4306856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00272 1 341 MYB Transcription Factor Family AT5G49330 41.555 2.28e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g00272 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00272 K09422 - gmx:100805532 345.125