Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00270 ATGAGTGCATCAGAAAGCCCTAACCTTCATCATTCTGAGAACAAACGTTCCTCCTCAGATCAGTTGAAGCTATTTGGCTTCCCACTAACCCTTGCCTGCAACGACATGCCGTTCAAGGCCATGCCTTATGATCAGAGTCAGGCCAAGAGATTCAGATGCCACTTCTGCAGCCGCGTGTTTGCCAATTCTCAAGCACTGGGTGGCCATCAAAACGCGCATAAGAGAGAGAGGCAACAGGCCAGACTAGCCCAGTTAGAATACCTTCCCTATCATCTTCCTCAACGGTTCGTGGCGCATGAAGCCACAGGATCGGGAGGACCAGAGATTGATCCAAGTGGGTCACCACCAGGCAGTACTGATGCAGCTTGGTTATTTCGGAGTAGGGTTCTGCCACCGCCTTTGTTCTCTGTGCCTGAGGAACTATCCCCTGATACATTTGGGTATTACTTCTACAACGGGAAGCCACGTCATCAGCTTCCTCTAGTGAAAAAAGGCCCTGTCATGGAAGAATTAGAGAATCTTGATGGTGTCGATCTTAACTTGACTCTAGCTAGCAAGCCCTActccacctccacctccacctccGAGGACAAGCAGTGCTTGGGCTGGACCTG 614 0.4837 MSASESPNLHHSENKRSSSDQLKLFGFPLTLACNDMPFKAMPYDQSQAKRFRCHFCSRVFANSQALGGHQNAHKRERQQARLAQLEYLPYHLPQRFVAHEATGSGGPEIDPSGSPPGSTDAAWLFRSRVLPPPLFSVPEELSPDTFGYYFYNGKPRHQLPLVKKGPVMEELENLDGVDLNLTLASKPYSTSTSTSEDKQCLGWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00270 204 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Bva06g00270 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Bva06g00270 204 SUPERFAMILY beta-beta-alpha zinc fingers 48 78 IPR036236 -
Bva06g00270 204 PANTHER ZINC FINGER PROTEIN 6-LIKE 9 185 - -
Bva06g00270 204 PANTHER ZINC FINGER PROTEIN 5 9 185 IPR044299 GO:0010090
Bva06g00270 204 Gene3D Classic Zinc Finger 38 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00270 Bva-Chr6 4295024 4295638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00270 22 85 C2H2 Transcription Factor Family AT5G06650 45.070 9.45e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g00270 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00270 - - qlo:115994136 96.6709