Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00262 ATGAATCCGAGTGGCAAGGGATCCATGTCAACCATAAGTACTAGTTCAGCAAGGAAAGCTGGTGAACTCGTCCCCGATTTTCCGGCTGGTCTGCGGGTGCTGGTGGTGGACGATGATCCCACCTGTCTGATGATACTTGAGAAGATGCTTTGCACTTGCCTCTATGAGGTTACAAAATGCAATCGAGCGGAGACAGCTCTTTCACTGctgagagagaagaaaaatgggttCGACATTGTTATAAGCGATGTACATATGCCAGATATGGATGGCTTCAAACTTCTAGAGCACATTGGTCTAGAAATGGACCTTCCAGTTATCATGATGTCAGCAGATGATGGAAAAAATGTTGTTATGAAAGGTGTTACACATGGTGCCTGTGATTACTTGATAAAACCTGTCCGAATTGAGGCTTTGAAGAACATTTGGCAACATGTGGTTcggaagagaaagaatgaaTGGAAGGATTTAGAGCAATCTGGTAGTGCAGAAGAAGGAGATCGTCAGCAAAAGCAATCTGCTGATGAAGCTGATTACTCATCCTCAGCAAATGAAGGCAGTTGGAAAAACTCAAAGAAGAGGCGAGATGAGGACGAAGATGCAGAAGAGAGGGATGACACATCCGCGTTAAAGAAGCCACGAGTTGTTTGGTCTGTTGATCTCCATCAACAGTTTGTAGCAGCTGTTAATCAACTGGGAATTGACAAGGCTGTGCctaaaaaaattctagaatTGATGAATGTTCCTGGGCTCACTAGAGAGAATGTTGCTAGCCACCTCCAGAAATATCGTTTGTATCTTCGAAGGTTGAGTGGAGTTTCTCAGCACCAGGGTAGCTTGAACAACTCTTTCATCAGCACACAAGATGCGACATTTGGTTCAATTTCCTCACTTAATGGAATTGATCTCCAAACTCTCGCTGCTGCTAGTCAGCACCCAGCACAAAGTCTAGCAACGCTTCAGGCAGCAGGACTTGGTAGATCAACTGCAAAAGCTGGAGTACCAATGTCCATTGTTGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTTGGAGAAGGGCAACAGCAACATATGAACAGTAATAAAACCATGAACTTGCTTCATGGAATTCCTACTACTATGGAGCCGAAACAGCTTGTCAATTTACACCAATCTACACAATCCCTTGGAAGCTTGAATATGCGAGTCAGTGCTACAACTCCACAGAGTAGCCCCTTGATAATGCAGATGGCACAATCCCAACCGAGGGGCCAGATGTTAAGTGAAAGTATTGCTTCTCATGTTCCAAGGCTTCCAACAGCTATGGCTCAGCCTAATGTAGCAAATAGTGTTTTAGGTAGAGATGGGATTGCTGATGTTAGCAGAGGATCAGTATATAATCAAATCCCACAAACCTCTCCAATGTTGAGTTTTCCTGGGAATCAAACCACAGAAGTGCCCATCAACAGTTTCCCTCTTGGAAGCACTCCAGGAATATCCAATATCACACCAAAAAGCAACTTCCAAGACGAAGTCACTTCAGGGATGAAAGGATCTGGTGGATTTGCTCCAAGTTATGATATTTTCAATGAACTGCACCAGCAGAAGTCTAATGATTGGGAGTTACAAAACGTGGGCCTGGCATATGATGCCTCGCAGCATGTAAATCCCTTACAAGGTAACATTGATGTCTCACCTTCCGTTTTAGTCCATCAAGGTTTTCCATCTACCCAACAAGCTGGACAGAACAGAGAAGCTAATTCTATAGGGAAAGCCATGTACTCTCTAGGTGAAGGCATGGATCAAACTAATCTCCAAAATATTGGTCAAAACCTCAATACCCTTCTTGTTGACAATTCTGTAAGGGTTAAGACTGAAAGAGTTCCTGATGCAAGCTCCCAAAGTAACCTTTTCCCTGAGCATTATGGGCAAGAAGATCTTCTGAGTGCCTTTCTGAAACAGCAAGAAGGCATGGGACCAGCTGAGAGtgagtttgattttgatggaTATTCGCTGGACAATATTCCTGTATA 2024 0.4214 MNPSGKGSMSTISTSSARKAGELVPDFPAGLRVLVVDDDPTCLMILEKMLCTCLYEVTKCNRAETALSLLREKKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSAEEGDRQQKQSADEADYSSSANEGSWKNSKKRRDEDEDAEERDDTSALKKPRVVWSVDLHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGSLNNSFISTQDATFGSISSLNGIDLQTLAAASQHPAQSLATLQAAGLGRSTAKAGVPMSIVDQRNLFSFENPRLRFGEGQQQHMNSNKTMNLLHGIPTTMEPKQLVNLHQSTQSLGSLNMRVSATTPQSSPLIMQMAQSQPRGQMLSESIASHVPRLPTAMAQPNVANSVLGRDGIADVSRGSVYNQIPQTSPMLSFPGNQTTEVPINSFPLGSTPGISNITPKSNFQDEVTSGMKGSGGFAPSYDIFNELHQQKSNDWELQNVGLAYDASQHVNPLQGNIDVSPSVLVHQGFPSTQQAGQNREANSIGKAMYSLGEGMDQTNLQNIGQNLNTLLVDNSVRVKTERVPDASSQSNLFPEHYGQEDLLSAFLKQQEGMGPAESEFDFDGYSLDNIPV 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00262 674 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Bva06g00262 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 647 IPR045279 GO:0009736
Bva06g00262 674 PIRSF RR_ARR_type-B 10 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bva06g00262 674 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Bva06g00262 674 Gene3D - 31 170 - -
Bva06g00262 674 Gene3D - 209 271 - -
Bva06g00262 674 Pfam Response regulator receiver domain 33 141 IPR001789 GO:0000160
Bva06g00262 674 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Bva06g00262 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 647 - -
Bva06g00262 674 CDD REC_typeB_ARR-like 33 147 - -
Bva06g00262 674 MobiDBLite consensus disorder prediction 155 174 - -
Bva06g00262 674 SMART REC_2 31 143 IPR001789 GO:0000160
Bva06g00262 674 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Bva06g00262 674 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Bva06g00262 674 MobiDBLite consensus disorder prediction 188 209 - -
Bva06g00262 674 SUPERFAMILY CheY-like 30 155 IPR011006 -
Bva06g00262 674 MobiDBLite consensus disorder prediction 155 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00262 Bva-Chr6 4250669 4254540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00262 66 674 Response Regulator Gene Family AT3G16857 49.547 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bva06g00262 Response_reg 2.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00262 - K14491 gmx:100814930 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01315 05 6921418 6925420 Bva06g00262 06 4250669 4254540 BWGD