LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g00205	ATGGCTAACACTAATACTATGGCTAGGTCGTTTGTGCAAGTGGCAACGACGGAGGAGACTGTAACTCCTCTCAGAGTGGTACAGATAGAGGGTCtgGTCATCCTGAAGATAATCAAACATTGTAAGGACCACTCACCTGCTTTAGTCACTGGACAACTTCTGGGGCTGGATGTTGGGAGTGTTCTTGAAGTTACGAACTGTTTCCCTTTCCCGATTAGGGAGGAGGATGAGGAAATAGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCCACATTACTAGGTTCCTTTCAGACTGTGGAGCTGATTGAAACTTTCATGAATTACCAGGAGAACATTAGACGTTGTGTTTGCATAATATATGATCCGTCAAGGTCTAATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGATTCATTTATGGAACACTATAAAAGCAACAACTTCACAGGAGAAAAATTGAGGGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAGATACCTatcaaagtttcaaattctGCCCTTATCAGTGCATTCATGACAGAGCTTGAACCAGATACACCAGTCAGCCAGTGTGATTATGATCGCCTGCAATTGTCATCCAGTTCATTAATGGAGAGGAATATGGAATTTTTGATCGAGTGTATGGATGATTTGTCACTAGAACAACAGAAGTTCCAATACTACTACCGGAGTTTGTCCAGGCAGCAGGCTCAGCAACAAGCATGGCTTCAGAAGAGAAGAACAGAGAACATGGCTCGTAAGGCTGCTGGAGAAGATCCTTTGCCCGAGGAAGATCCTTCAAACCCCATTTTCAAGCCAATCCCAGAGCCATCACGGTTGGATGGCTTCCTCataacaaatcaaatttccAACTACTGCAACCAAATTAATGGAGTGTCAGGGCAGAGTTTTAACAGACTTCATTTGATGAAGGCACTGCATGAGGATTCATA	1022	0.4217	MANTNTMARSFVQVATTEETVTPLRVVQIEGLVILKIIKHCKDHSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMEHYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVSQCDYDRLQLSSSSLMERNMEFLIECMDDLSLEQQKFQYYYRSLSRQQAQQQAWLQKRRTENMARKAAGEDPLPEEDPSNPIFKPIPEPSRLDGFLITNQISNYCNQINGVSGQSFNRLHLMKALHEDS	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g00205	340	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	22	339	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Bva06g00205	340	Pfam	C-terminal region of eIF3h	145	338	IPR045810	-
	Bva06g00205	340	SMART	pad1_6	26	159	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Bva06g00205	340	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	5	338	-	-
	Bva06g00205	340	Gene3D	Cytidine Deaminase, domain 2	2	216	-	-
	Bva06g00205	340	ProSiteProfiles	MPN domain profile.	27	160	IPR037518	-
	Bva06g00205	340	MobiDBLite	consensus disorder prediction	270	284	-	-
	Bva06g00205	340	CDD	MPN_eIF3h	25	288	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Bva06g00205	340	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	25	128	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Bva06g00205	340	MobiDBLite	consensus disorder prediction	267	296	-	-
	Bva06g00205	340	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H	5	338	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g00205	Bva-Chr6	3605455	3609823	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g00205	90	339	Eukaryotic Initiation Factors Gene Family	AT1G10840	83.200	1.32e-155	434

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g00205	K03247		-	gmx:100795273	615.15