Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00190 ATGGCTCTTGCTCTTCAACAAGCATTCTTGCATTTACTCACTCTTATagctttcttttcaatttttcaagtgACCCCAGCCTCTTGCTCCAACCCTAGAAAGCTTCTTAATTCTTCATACTCCCCTTCTGGTTCAGATTGGTCACCAGCAGAGGCCACTTGGTATGGAAGCCCCAATGGTGCTGGAAGTGATGGTGGTGCTTGTGGATATGGAAATGCTGTTGAGCAGCCACCATTCTCTGCAATGATATCAGCTGGAGGCCCTCCTTTGTATCAGTCAGGCAAAGGATGTGGTGCTTGTTATGAGGTGAAGTGTACCGGGAATTCGGCATGTTCAGGCAAGCCGGTGCATGTGGTGATCACTGACGAGTGTCCTGGTTGTGGTTCAAATGAACTagttcattttgatttgagtGGCACTGCTTTTGGTGCCATGGCGGTTTCAGGTCAGGCTGAGCAGCTACGCAATGCTGGGAAATTGGACATTCAACATAGAAGGGTTGAATGCAACTACCCTGGTATGTCAATAGAGTTTCACGTGGATGCTGGCTCAAACCCTAACTATTTTGCTTCCTTAATTGAATATGAGGATGGGGATGGTGACCTTTCCAAAGTTGAGCTCAAACAAGCCCTTGACTCGGACTCATGGCTCCAGATGCAGCAATCTTGGGGTGCAGTTTGGAAACTTGACATAGGATCAACCCTAAAAGCTCCCTTCTCTCTCCGGCTAACGTCGGATTCCGGCAAGACTATTGTGGCCAACAATGTGATCCCGGCAGGTTGGGCGCCCGGTCAGACTTACCGTTCAGTTGTGAATTTTCAAACCTA 827 0.4631 MALALQQAFLHLLTLIAFFSIFQVTPASCSNPRKLLNSSYSPSGSDWSPAEATWYGSPNGAGSDGGACGYGNAVEQPPFSAMISAGGPPLYQSGKGCGACYEVKCTGNSACSGKPVHVVITDECPGCGSNELVHFDLSGTAFGAMAVSGQAEQLRNAGKLDIQHRRVECNYPGMSIEFHVDAGSNPNYFASLIEYEDGDGDLSKVELKQALDSDSWLQMQQSWGAVWKLDIGSTLKAPFSLRLTSDSGKTIVANNVIPAGWAPGQTYRSVVNFQT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00190 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 269 IPR007117 -
Bva06g00190 275 Pfam Expansin C-terminal domain 176 258 IPR007117 -
Bva06g00190 275 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Bva06g00190 275 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Bva06g00190 275 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Bva06g00190 275 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Bva06g00190 275 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Bva06g00190 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Bva06g00190 275 SMART dpbb_1 83 164 IPR007112 -
Bva06g00190 275 Gene3D - 34 170 IPR036908 -
Bva06g00190 275 PANTHER EXPANSIN-B3 12 274 - -
Bva06g00190 275 Gene3D - 171 274 IPR036749 -
Bva06g00190 275 SUPERFAMILY Barwin-like endoglucanases 39 173 IPR036908 -
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 245 262 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Bva06g00190 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Bva06g00190 275 SUPERFAMILY PHL pollen allergen 176 269 IPR036749 -
Bva06g00190 275 PANTHER EXPANSIN-B2-RELATED 12 274 - -
Bva06g00190 275 Pfam Lytic transglycolase 84 162 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00190 Bva-Chr6 3452250 3453635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00190 1 273 Expansin Gene Family AT1G65680 61.314 1.93e-121 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00190 - - gmx:548090 423.705