Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00188 atgaaagaagagaaatatagaagaagaacagagaagaagaaagATGAGGGAAGAGGATGTGTAGCTTGTTATCAGATGAAATGCAGAGAAAATGTTGAATGCTCAGGAAACCCAATTACAGTGGTTACAACTGATGAATGCAAAACCTGTTCCTCAGACAAAGACCATTTTGATCTTAGTGGTACTGCATTTGGTGCTTTGGCAAAACCAGGCAAAGCTGATAATCTTCGCCAAGCTGGACGCCTTCAAGTTAAATACACAAGGGTTGCATGCCAGTTTGGTACCAATATAGCCCTTAAAGTGGATAGTGGGTCCAACCCTTACTATTTCTCTCTGGtaattgaatatgaaaatgataatagCAACCTTGCAGCAGTTCATCTCAAGCAAGCTCAGCCATCAGACTCATGGGTTTCAATGAAACGGGATCGGGGTGCAGTTTGGATACTGAACTCATCTTCACCCTTACGAGCTCCCTTATCTGTCAAGCCCGCCGAGGCGAGTGGCGAGACTATTGTGGCCGAGAACGTGATTCCGGTGGATTGGAAACCGAGAAATACTTATCATTCTTTAGTCAAATTTAAGAATAGTGTCTG 596 0.3977 MKEEKYRRRTEKKKDEGRGCVACYQMKCRENVECSGNPITVVTTDECKTCSSDKDHFDLSGTAFGALAKPGKADNLRQAGRLQVKYTRVACQFGTNIALKVDSGSNPYYFSLVIEYENDNSNLAAVHLKQAQPSDSWVSMKRDRGAVWILNSSSPLRAPLSVKPAEASGETIVAENVIPVDWKPRNTYHSLVKFKNSV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00188 198 PRINTS Expansin/Lol pI family signature 79 95 IPR007118 GO:0005576
Bva06g00188 198 PRINTS Expansin/Lol pI family signature 10 28 IPR007118 GO:0005576
Bva06g00188 198 PRINTS Expansin/Lol pI family signature 176 190 IPR007118 GO:0005576
Bva06g00188 198 PRINTS Expansin/Lol pI family signature 137 151 IPR007118 GO:0005576
Bva06g00188 198 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 96 IPR007112 -
Bva06g00188 198 SUPERFAMILY PHL pollen allergen 96 190 IPR036749 -
Bva06g00188 198 Pfam Lytic transglycolase 16 86 IPR009009 -
Bva06g00188 198 PRINTS Major pollen allergen Lol pI signature 28 38 IPR005795 GO:0005576|GO:0019953
Bva06g00188 198 PRINTS Major pollen allergen Lol pI signature 99 114 IPR005795 GO:0005576|GO:0019953
Bva06g00188 198 PRINTS Major pollen allergen Lol pI signature 146 163 IPR005795 GO:0005576|GO:0019953
Bva06g00188 198 PRINTS Major pollen allergen Lol pI signature 166 183 IPR005795 GO:0005576|GO:0019953
Bva06g00188 198 PRINTS Major pollen allergen Lol pI signature 68 83 IPR005795 GO:0005576|GO:0019953
Bva06g00188 198 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Bva06g00188 198 Gene3D - 10 92 IPR036908 -
Bva06g00188 198 Gene3D - 94 193 IPR036749 -
Bva06g00188 198 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 108 190 IPR007117 -
Bva06g00188 198 Pfam Expansin C-terminal domain 97 179 IPR007117 -
Bva06g00188 198 PANTHER EXPANSIN-B2-RELATED 16 195 - -
Bva06g00188 198 SUPERFAMILY Barwin-like endoglucanases 15 93 IPR036908 -
Bva06g00188 198 PANTHER EXPANSIN-B3 16 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00188 Bva-Chr6 3441009 3442928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00188 15 194 Expansin Gene Family AT2G45110 50.000 4.65e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00188 - - egr:104444465 214.157