Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00156 ATGGCGTTTCATCCACAACCGCCGCAAGAAGGTGAAGAAGACACCAACATCGATGTGCACACCAGTCGCGGGACTCCCATTCGGTATGTTCCTCTCGATCATCTATATTCTGCGACTTCGCCTTGTCGGGTTAACCCGAGTGGTTCTGCTAATGTCATGTCGAAGAAGGTGAAAGCGCGGAAGCTTAATCTTTGTCATTTGGAGGAGGATGGTGATCAGAAAAAGGCTCCGGAGAAACCGCCTCTTGTCCATGTCTACTCTCGCCGCCGAAAGAGGCTACGGCATTGCTCACAAAGCTTGTCGTTTTATGATTCCTTGGTGGGTCGGGTTGAGTCCACCTCCGAGAATTGTGAAATTGATGAGTACGATAAGGACCGGGAAAACGACAATTTTGAGGAGGTGGGGGTTTTGGTTAAGAAGAGGAAaggtgatgatgatgatgctgAGTTGCGGAAAGATTGTAGCCCACTCGGGAGCCTTGACCGGCCTCGGCTGAGGAATGGTCGTAATTTCAGTGTTTTTAATTCCCGCAATAGTCGGATAAAGCAGCACACTTCTTCGGAAAATTGCCTCAAGATGTTGCCTGCATCTCACTCCGTGAAAAGATGGGTCAGGTTGATTATTGTTAATGTTGATCCCAAAACATTTGTTGGGTTACAATGCCAGGTCTATTGGCCTTTGGATCTTGATTGGTATACTGGTTCTATTGAAGGTTATGATTCAGAAACTAAGCTGCATCATGTTAAATATAAAGATGGTGATGAAgaagatttaaatatttcaagtgagaaaataaaatttcatgtttCCCGTGAGGATATGCAGCACTTAAATTTGAGGTACGGGCCCAAAGGTTCAGAAAGTGATGTCTCTGACTACAATGAGATGCTTGTTTTGGCTGCAAGTTTGGATGATGATCAAGAGATTGAGCCAGGGGATCTCATATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTGTTGTCTTGGATGAGTCTTTTTGTCAGGGACTAAAATCGTTTCCTGGAGGAAGTTTAGTTCCTGTTCAATTTTTTGGCAGCCATGACTTTGCAAGGGTTAAAATGCGGCATGCTGTCCCATTTGTCAAAGGCCTTCTTGCTTCTTTCCACTTGAAGTGCAAGAAACCTCGTTTTATTGACAGTTTAGAAGAGgcaaaaaaGTATTTAAATGATTGGAAACTTCCTTCAGACATGCTACGCGTGCGGAAAGGATTTAAGGCTGGTGACTGTAAAAATGCAAGTGAAGATGATGACAGATATTCTGATTCAAGTGAAGATTGTTTAGATGGCAAAGGGACTGAGGCAGCTCTGAGAAACATGGAAACTTCTCCTTACATAATAGGAgacttaaaaattctaaatcttgGAAAGATTGTCGAGGACTCTAGATATTTCCGGGATGATAGATACGTCTGGCCAGAAGGGTATACGGCAGTGAGGAAGTTCACTTCAATTACTGATCCAAAAGTATGTTCCTTGTATAAGATGGAGGTGCTGAGAGATGCTGAATCCAAGATTAGGCCACTGTTTAGAGTGATCTCACTAGATAATGGAGATCAGTTCAGTGGTTCTACACCATCAGCTTGCtggaataaaatttacaaaaggataaaaagaatagaaaaggaTGTTTCTGATGGTTCTGTCACAGGTGGGGTAGAAAGGGTCTATAAGTCTGGATCTGAGATGTTTGGGTTCTCCAATCCTGTAGTGGATAAACTTATACGGGGTTTACCCAACTTTTTCAAGTTAGGGTCTGGATATAGGAGAGTTCGTATTGATTGGTATGATCTTGATAAGTGCAATGTGTGTCACATGGATGAGGAGTACGAGAACAATCTCTTTCTGCAGTGTGACAAATGCAGAATAATGGTCCATGCGAAATGTTACGGAGAACAGAAACCAGTTAACGGCGTGCTATGGCTATGCAACCTATGTCGCCCTAGCGCTCCTGAACCTAACACACCTTGCTGCTTGTGTCCACTCCTAGGAGGTGCAATGAAGCCTACAACAGATGGCCAGTGGGCTCATTTGGCATGTGCCATGTGGATTCCTGAAACTTGCTTGGCTGATGTCAAGAAAATGGAGCCTATTGACGGGCTAGATAGAATCAATAAGGACCGCTGGAAGTTGTTATGTAGCATATGTCGAGTAAAATATGGCGCTTGCATTCAATGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGGGCAGCTGGTCTCTGTGTTGAGCTAGAGGATGAGGATCGGCTATATGTACTTTCTctagatgaagatgaagatcaATGTGTTCGCCTACTTTCTTTCTGTTGGAGACATAGACAGCCTAATGGACATTCAGTTGGTGATGAACGTATTAAGCGGGTTGGTGGTCATTGTTCTGACCATAAACCACCATCCAACCCATCTGGTTGCGCTCGCAGTGAACCATACAATTACTTTGGCAGGAGAGGCAGAAAAGAACCTGAAGCACTTGCAGCTGCATCCTTGAAGCGCTTGTTTGTAGAGAACCAACCTTACTTAGTAGGTGGATACTGTCAGCATGGATTGCTTAACAACCTAGAGCCTTCTGGCAGAGGAGTTTGCCCTAAATTCTTTTGTAGCCAAAATAGGCTGAGAGGCTCTCTGGCTGATGCTTCTAACAGTGTACTTTCTACTGCTGAGAAATACAAGTACATGAAGGAAACCTTTCGGAAATGCTTAGCatttgGGAAATCAAGAATTCATGGATTTGGCATCTTTGCGAAGCATCCGTTTAAAGGAGGGGACATGgtGATTGAATACACTGGTGAACTTGTTAGACCTCCCATTGCTGACCGGAGAGAGCATTTTATATACAATTCATTGGTGGGAGCTGGGACGTACATGTTTCGAATTGATGATGAACGAGTGATTGATGCTACAAGAGCAGGAAGCATTGCTCATTTAATAAACCATTCTTGTGAAcCAAATTGCTATTCAAGGGTAATAAGTGTTAACGGTGATGagcatataataatatttgcgAGGAGGGACATTAAACAATGGGAAGAGCTTACTTATGATTACAGGTTTTTCTCAATTGATGAACAACTGGCTTGTTATTGTGGGTTCCCAAGGTGCAGAGGTATAGTAAATGACACTGAGGCAGAAGATCGTGCTTCTAAGCTATATGTGCCTCGAAGTGAATTGATAGATTGGAGAGGAGAATG 3224 0.4172 MAFHPQPPQEGEEDTNIDVHTSRGTPIRYVPLDHLYSATSPCRVNPSGSANVMSKKVKARKLNLCHLEEDGDQKKAPEKPPLVHVYSRRRKRLRHCSQSLSFYDSLVGRVESTSENCEIDEYDKDRENDNFEEVGVLVKKRKGDDDDAELRKDCSPLGSLDRPRLRNGRNFSVFNSRNSRIKQHTSSENCLKMLPASHSVKRWVRLIIVNVDPKTFVGLQCQVYWPLDLDWYTGSIEGYDSETKLHHVKYKDGDEEDLNISSEKIKFHVSREDMQHLNLRYGPKGSESDVSDYNEMLVLAASLDDDQEIEPGDLIWAKLTGHAMWPAVVLDESFCQGLKSFPGGSLVPVQFFGSHDFARVKMRHAVPFVKGLLASFHLKCKKPRFIDSLEEAKKYLNDWKLPSDMLRVRKGFKAGDCKNASEDDDRYSDSSEDCLDGKGTEAALRNMETSPYIIGDLKILNLGKIVEDSRYFRDDRYVWPEGYTAVRKFTSITDPKVCSLYKMEVLRDAESKIRPLFRVISLDNGDQFSGSTPSACWNKIYKRIKRIEKDVSDGSVTGGVERVYKSGSEMFGFSNPVVDKLIRGLPNFFKLGSGYRRVRIDWYDLDKCNVCHMDEEYENNLFLQCDKCRIMVHAKCYGEQKPVNGVLWLCNLCRPSAPEPNTPCCLCPLLGGAMKPTTDGQWAHLACAMWIPETCLADVKKMEPIDGLDRINKDRWKLLCSICRVKYGACIQCSNNSCRVAYHPLCARAAGLCVELEDEDRLYVLSLDEDEDQCVRLLSFCWRHRQPNGHSVGDERIKRVGGHCSDHKPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGLLNNLEPSGRGVCPKFFCSQNRLRGSLADASNSVLSTAEKYKYMKETFRKCLAFGKSRIHGFGIFAKHPFKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFARRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGIVNDTEAEDRASKLYVPRSELIDWRGE 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00156 1074 SMART PHD_3 607 654 IPR001965 -
Bva06g00156 1074 SMART PHD_3 719 785 IPR001965 -
Bva06g00156 1074 SMART fyrn_3 464 508 IPR003888 GO:0005634
Bva06g00156 1074 SUPERFAMILY Tudor/PWWP/MBT 305 401 - -
Bva06g00156 1074 SMART fyrc_3 516 609 IPR003889 GO:0005634
Bva06g00156 1074 ProSiteProfiles PWWP domain profile. 311 371 IPR000313 -
Bva06g00156 1074 CDD SET_SETD1-like 898 1046 - -
Bva06g00156 1074 Pfam PHD-finger 620 654 - -
Bva06g00156 1074 ProSiteProfiles SET domain profile. 910 1028 IPR001214 GO:0005515
Bva06g00156 1074 Pfam F/Y rich C-terminus 514 590 IPR003889 GO:0005634
Bva06g00156 1074 Gene3D SET domain 854 1062 IPR046341 -
Bva06g00156 1074 ProSiteProfiles Zinc finger PHD-type profile. 605 656 IPR019787 -
Bva06g00156 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 787 IPR013083 -
Bva06g00156 1074 MobiDBLite consensus disorder prediction 1 22 - -
Bva06g00156 1074 CDD ePHD_ATX1_2_like 664 784 IPR041956 -
Bva06g00156 1074 PANTHER PHD FINGER PROTEINS 10 1071 - -
Bva06g00156 1074 Pfam PHD-zinc-finger like domain 663 783 - -
Bva06g00156 1074 SMART PWWP_4 309 369 IPR000313 -
Bva06g00156 1074 SMART set_7 910 1034 IPR001214 GO:0005515
Bva06g00156 1074 ProSiteProfiles Extended PHD (ePHD) domain profile. 661 785 IPR034732 -
Bva06g00156 1074 Pfam F/Y-rich N-terminus 455 505 IPR003888 GO:0005634
Bva06g00156 1074 Pfam PWWP domain 312 396 IPR000313 -
Bva06g00156 1074 ProSiteProfiles FYR domain FYRN motif profile. 449 508 IPR003888 GO:0005634
Bva06g00156 1074 SMART TUDOR_7 213 271 IPR002999 -
Bva06g00156 1074 ProSiteProfiles FYR domain FYRC motif profile. 512 599 IPR003889 GO:0005634
Bva06g00156 1074 SUPERFAMILY SET domain 908 1047 IPR046341 -
Bva06g00156 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 658 IPR013083 -
Bva06g00156 1074 Gene3D - 450 590 - -
Bva06g00156 1074 ProSitePatterns Zinc finger PHD-type signature. 608 653 IPR019786 -
Bva06g00156 1074 Pfam SET domain 921 1027 IPR001214 GO:0005515
Bva06g00156 1074 SUPERFAMILY FYVE/PHD zinc finger 599 672 IPR011011 -
Bva06g00156 1074 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 10 1071 - -
Bva06g00156 1074 ProSiteProfiles Post-SET domain profile. 1034 1050 IPR003616 -
Bva06g00156 1074 Gene3D - 297 402 - -
Bva06g00156 1074 Gene3D - 213 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00156 Bva-Chr6 3153384 3176533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00156 608 755 C2H2 Transcription Factor Family AT3G14740 40.397 2.18e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva06g00156 zf-HC5HC2H_2 7.4e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00156 - - gmx:100808923 1518.83