Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00143 ATGGTGAACATTATGGAATGGGAGAAGCAGcaacagcaacaacaacagcaacagCAGCTACAGCAAAAGAGAGAGGGGCTACAGAGTGGGAATGTGAATGGGAACTGTGCTGGGATGATGTGTGTGAAGGTGATGACTGATGAGCAATTGGAAACTCTCAGGAAGCAAATCGCTGTTTATGGTGTCATTTGTGAACAACTCGTTGATTTGCACAAGCAATTCGTTGCTCAGCAGGATCTTGCAGGTGCTAGGCTGGGAAACATGTACTCTTCAGATTTTAGAGCGTATATTCGATCAGGGAATGGAACTCCAAGCAAGCAGAAGATCAAGGAGATAACTGCTGAACTGAGCCAGCATGGTCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCCCGatccaaaagaaaacagcaaAATGTAGCTTCTGGTAATGCTGAATCCGAGGTAGAGACTGAAGCTGAGTCAATCAAGGATAAGAAGACAAAACCAGAGGAGTTTCAGTCCCAAAATAGCGGAAACTCAAGGACTGAAGATTTGTGTTTGCAGAATCCTGAAGTATCCTCTGAATTGCACTACTTGACTCCACATTCTGATGGACCAGATTCCATGTTTCCATCAGATGGTGGTCTTAAACCTGCGAGAGGTTTTAATCAAATGTCTGTTCTTGAGGGGATGCTGTCAAACTCTCGAGGTGACTACATGACTGGAAAAATGGAAGTGCCAGGAAGCTACACTTTATACCCTCAAGCCGGAGACTATAACATGACGGGTTG 788 0.4201 MVNIMEWEKQQQQQQQQQQLQQKREGLQSGNVNGNCAGMMCVKVMTDEQLETLRKQIAVYGVICEQLVDLHKQFVAQQDLAGARLGNMYSSDFRAYIRSGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVASGNAESEVETEAESIKDKKTKPEEFQSQNSGNSRTEDLCLQNPEVSSELHYLTPHSDGPDSMFPSDGGLKPARGFNQMSVLEGMLSNSRGDYMTGKMEVPGSYTLYPQAGDYNMTG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00143 262 SMART HOX_1 78 145 IPR001356 GO:0003677
Bva06g00143 262 PANTHER - 3 91 - -
Bva06g00143 262 PANTHER - 99 261 - -
Bva06g00143 262 ProSiteProfiles 'Homeobox' domain profile. 93 141 IPR001356 GO:0003677
Bva06g00143 262 Gene3D - 94 146 - -
Bva06g00143 262 PANTHER WUSCHEL-RELATED HOMEOBOX 13 99 261 IPR044559 GO:0003700
Bva06g00143 262 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 91 IPR044559 GO:0003700
Bva06g00143 262 Pfam Homeodomain 101 140 IPR001356 GO:0003677
Bva06g00143 262 SUPERFAMILY Homeodomain-like 101 143 IPR009057 -
Bva06g00143 262 MobiDBLite consensus disorder prediction 139 183 - -
Bva06g00143 262 MobiDBLite consensus disorder prediction 196 217 - -
Bva06g00143 262 CDD homeodomain 101 142 IPR001356 GO:0003677
Bva06g00143 262 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00143 Bva-Chr6 3004737 3008528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00143 4 262 Wox Gene Family AT4G35550 41.776 7.66e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Bva06g00143 Homeodomain 4.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00143 - - qsu:112005537 318.931