Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00142 ATGTACCCCTCTTCGTCTTCCTCATCGGCAAAACCCATACCACCCCAAAGCGGGTTGACCCGATTCGCTTCCGCGCCCAGTTCCCTCTTAACCACAGCCGTCCATGAGGTCGTCGGAGCTGACCGTGAATTCTCCGCCTCTGGATCACGCACTCTCGTCGGCCATTACTTCTCCGGAGACTCGTATTCCCTCACCTCCGAGTCTACCTGCAAAGTCAACTCATCTAACGATTCAGAACAGCCTAAATCAGGATTGCAGAGATCCTACGGTCTACATGAGACAACAGCTAGGGACTTCCCCTCGTCGAGACATTTAAAGAGCGCCGCCGCAGCCCCCGCGGGTGGTGCTGGACCCTCGTCTTCTTCCTCTGCTTTGGTTCGTCAGAAGAGCTCACCGGCTGGCTTCCTCAGCCATCTTACTAGTGCTGGCGACAACAACGCTGGCTTCTCAATTTCAAGAGGCACTGGAAGCTACAACTGGCAAGGCATCTCTAATAATGGCCATGGTGTGTCAAGGTTGAAGTCTCAGTTGAGCTTCACTGGGCAAGATTCTCTTTCTCAAATATCAGAGGTGAGTGAAAACGTTGTTGATGGCATCAGTTCTGACAGCAACCACCATAGAACTACACATAATTATGTCACTTCCAGCTTCGGAATGGACACGTGGGAAAATTCAAACTCCATCGTGTTTTCTCAACCGTCAAATAAGCGTGCTAAGAATATTGATGGAGACATTCTAAATTGTCTCAGCGCATTGGATTCTCAGTTTCTACCACAGACAACTCTAGAAATGGCAACAGTTGACAGGCTAATTCAAATTCCTGAAGATTCTGTCCCGTGTAAAATTCGTGCCAAGCGAGGCTGTGCCACTCATCCACGAAGCATAGCAGAACGTGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAATTACAGGAGCTTGTACCTAATATGGATAAGCAAACAAGCTACGCAGACATGCTGGATTTGGCTGTTCAACATATCAAAGGGCTTCAAAATGAAGTTCAGAAGCTCCATGAAGAACTTGAGCATTGCACCTGTGGATGTAAAGAGAGCAAATA 1082 0.4815 MYPSSSSSSAKPIPPQSGLTRFASAPSSLLTTAVHEVVGADREFSASGSRTLVGHYFSGDSYSLTSESTCKVNSSNDSEQPKSGLQRSYGLHETTARDFPSSRHLKSAAAAPAGGAGPSSSSSALVRQKSSPAGFLSHLTSAGDNNAGFSISRGTGSYNWQGISNNGHGVSRLKSQLSFTGQDSLSQISEVSENVVDGISSDSNHHRTTHNYVTSSFGMDTWENSNSIVFSQPSNKRAKNIDGDILNCLSALDSQFLPQTTLEMATVDRLIQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNEVQKLHEELEHCTCGCKESK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00142 360 MobiDBLite consensus disorder prediction 94 127 - -
Bva06g00142 360 Pfam Helix-loop-helix DNA-binding domain 293 339 IPR011598 GO:0046983
Bva06g00142 360 Gene3D - 289 358 IPR036638 GO:0046983
Bva06g00142 360 CDD bHLH_AtbHLH_like 293 345 IPR045239 -
Bva06g00142 360 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 353 - -
Bva06g00142 360 SMART finulus 294 344 IPR011598 GO:0046983
Bva06g00142 360 Coils Coil 328 348 - -
Bva06g00142 360 PANTHER TRANSCRIPTION FACTOR BHLH129 18 353 - -
Bva06g00142 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 354 IPR036638 GO:0046983
Bva06g00142 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 338 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00142 Bva-Chr6 2991344 3002691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00142 13 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 47.453 7.53e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g00142 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00142 - - jre:108986309 466.077