LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g00053	ATGGATTTTCCTCAACAGGTTCTTTTACTCTGTTTATTGAGCCTGCCTCCTGTTTGTGTTTTTGCCCAAACCAGAAGTAATATAACTGTTGGTGAATCATTCTCTGCTGGGAACAACTCCCCATGGGTGGTTTCACCTTCTGGGGATTTTGCTTTTGGGTTTCACCCACTTGAAGATAATGATGAGCTTTTCTTGGTTTCCATCTGGTATGCCAATATACCAGAAAGAACCATAGTTTGGTATCCTAGTGGAGACAATCCAGCTCCTCCAGCACCGAAAGGGTCAAAACTAATGCTTACTGCTGATGGTGGGCTAGTGCTTACTTCCCCTGATGGTGGGGAGCTATGGAAACCAGACAACATTTTTTCTAGAGTTTCACATGGTGCTTTGAACGATGATGGCACTTTTGTGCTTGAAGATAGCAAATTCAGCAGTGTCTGGGAGACCTTCAAGAATCCTAGTGATACTTTACTGCCATCCCAGACGTTGGAAAAGGAGGGTACGCTCTCTTCTCGACTGTCATATACAAATTTCTCAAGGGGAAGGTTTGAGCTCCTTCTCAGAGATGATGGTAATCTTGTGTTTCGTTCTATCAACATACCATCTGATAATGCTAATGAAAACTACTATGAAAGTGGTACTGTTAAGAGTAATACATCAAGCCCTGGCTTTCAATTGGTCTTCAACAAATCAGGTGAGTTGTATATTTTGAGAGAGAACGGTGAAAGATTCAATTTTCCAGATTGGAAAAGAGCATCAGCTGCACAGTCTTATCTTCGAGCTACTCTTGATTTTGATGGAGTTTTCACTCTCTATCAGCATCCAAAGAATTCCTCTGTAAAGGAAGGTTGGACCCCTCTTGGGTCTCTACCAGATAATATCTGTAAAAAGAGCCTCGTGAATGAAGGTAGTGGGGTTTGTGGGTATAATAGTATCTGcaccttggatgattctaAAAGGCCAAATTGTCAATGCCCAAAAGGGTATTCTCTACTTGATCCTAAGGACCCTTATGGTAGCTGCAAACCAGACTTCATACAAGGCTGTGAAGAAGATGATCTTAGTCAGAGAAAAGATCTCTATCGATTTGAGGAATTAACAAATATTGACTGGCCTCTTGCAGATTATGTGCTTCTAAAGCCTTTTACTgaagaaaaatgcaaacaGTCTTGTATGGAAGATTGTTTCTGTGCAGTTGCAATTTTCCGGTTAGGTGATAGCTGCTGGAAAAAGAAGTTACCACTTTCAAATGGCAGATTTGATACGGGACTTGATGGTGGTAAAGCTTTTATCAAAGTGAGGAAGGATAATTCCACTTTAGTTGGTCCTGTAAATCCAATCATCATTAAAAAGGACCAGAATACTTTGATTTTGGTGGGTTCTGTGCTTCTTGGTAGCTCTGTGTTTGTTAACTGCATGCTTATTGGAGCAATCTGTTTAAGCTTTCTTTCCATTTATAGATATAAGAAAAAGCTCAATAGAATCAACAAAAGTGACGGTACTGTGGAAACCAATTTGAGGTGTTTTAGTTACAAGGAGCTGGAAGAAGCTACAAATGGGTTCAGCGAAGAGTTAGGAAGAGGAGCTTTCGCTGTTGTTTATAAAGGAGTAATAAACATGAGCTCTTGCACTCATGTGGCTGTGAAGAAGTTTAACAGATTTCTTATGCAAAATATTGAGAAGGAGTTCAGAACTGAAGTTGATGTCATTGGCCAGACCCATCATAAAAACTTGGTTAGATTGCTTGGATTCTGTGAAGATGGAGAAGAGAGGTTACTGGTATACGAGTGCATGAGAAATGGATCTTTGGATGGTCTTCTTTTTAGTGACTCAAAGCCCAGTTGGAATCTCAGACTCAAAATTGCAAATGGGATAGCAAGAGGGCTCTTGTATTTACATGAAGAATGCAGCACCCAAATCATCCATTGTGATATAAAGCCTCAAAACATACTCCTCGATGACTCCTATAATGCTCGGATTTCAGATTTTGGATTGGCCAAGCTTTTGAAGATGAACCAGAGCCATACCAACACCGGGTTGAGAGGAACAAAGGGGTATGTTGCACTTGAATGGTTCAGGAACATGCCTGTAACTACCAAAGTTGATGTATATAGCTTTGGAGTTGTGCTACTCGAGATTATATGTTGCCGGAGAAGTGTTGATATGGAAACACAAAACGAAGACAAAGCCATTTTAACTGACTGGGCTTATGACTGCTATAAAGAAGGTAACCTAGATGTTTTGGTTGAACATGATAACGAGGCAATTGGTGACAGGAATAACCTGGAGAAGTTAGTGATGATTGCTATGTGGTGTATCCAAGAGGATCCTTCTCTTAGACCCACCATGAGAAAGGTCACTCAGATGCTTGAAGGTGTTGTTGAAGTGCTTGTTCCACCATGCCCTTGCCCATTCAATATGGGTAAAGACCAATATTCTGGATATGAATGTGGAACCACAAGCTCTGATGACAACTCCAATGTCACTCCACCATG	2495	0.4032	MDFPQQVLLLCLLSLPPVCVFAQTRSNITVGESFSAGNNSPWVVSPSGDFAFGFHPLEDNDELFLVSIWYANIPERTIVWYPSGDNPAPPAPKGSKLMLTADGGLVLTSPDGGELWKPDNIFSRVSHGALNDDGTFVLEDSKFSSVWETFKNPSDTLLPSQTLEKEGTLSSRLSYTNFSRGRFELLLRDDGNLVFRSINIPSDNANENYYESGTVKSNTSSPGFQLVFNKSGELYILRENGERFNFPDWKRASAAQSYLRATLDFDGVFTLYQHPKNSSVKEGWTPLGSLPDNICKKSLVNEGSGVCGYNSICTLDDSKRPNCQCPKGYSLLDPKDPYGSCKPDFIQGCEEDDLSQRKDLYRFEELTNIDWPLADYVLLKPFTEEKCKQSCMEDCFCAVAIFRLGDSCWKKKLPLSNGRFDTGLDGGKAFIKVRKDNSTLVGPVNPIIIKKDQNTLILVGSVLLGSSVFVNCMLIGAICLSFLSIYRYKKKLNRINKSDGTVETNLRCFSYKELEEATNGFSEELGRGAFAVVYKGVINMSSCTHVAVKKFNRFLMQNIEKEFRTEVDVIGQTHHKNLVRLLGFCEDGEERLLVYECMRNGSLDGLLFSDSKPSWNLRLKIANGIARGLLYLHEECSTQIIHCDIKPQNILLDDSYNARISDFGLAKLLKMNQSHTNTGLRGTKGYVALEWFRNMPVTTKVDVYSFGVVLLEIICCRRSVDMETQNEDKAILTDWAYDCYKEGNLDVLVEHDNEAIGDRNNLEKLVMIAMWCIQEDPSLRPTMRKVTQMLEGVVEVLVPPCPCPFNMGKDQYSGYECGTTSSDDNSNVTPP	831

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g00053	831	Pfam	D-mannose binding lectin	77	166	IPR001480	-
	Bva06g00053	831	ProSiteProfiles	Protein kinase domain profile.	519	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva06g00053	831	ProSitePatterns	Protein kinases ATP-binding region signature.	525	550	IPR017441	GO:0005524
	Bva06g00053	831	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	640	652	IPR008271	GO:0004672\|GO:0006468
	Bva06g00053	831	Gene3D	Transferase(Phosphotransferase) domain 1	598	796	-	-
	Bva06g00053	831	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	8	807	-	-
	Bva06g00053	831	Pfam	Protein kinase domain	522	788	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva06g00053	831	PIRSF	SRK	3	829	IPR024171	GO:0004674
	Bva06g00053	831	Gene3D	-	20	151	IPR036426	-
	Bva06g00053	831	SMART	blect_4	33	153	IPR001480	-
	Bva06g00053	831	SUPERFAMILY	alpha-D-mannose-specific plant lectins	64	214	IPR036426	-
	Bva06g00053	831	ProSiteProfiles	Bulb-type lectin domain profile.	25	151	IPR001480	-
	Bva06g00053	831	SMART	serkin_6	519	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva06g00053	831	SUPERFAMILY	Protein kinase-like (PK-like)	502	791	IPR011009	-
	Bva06g00053	831	CDD	STKc_IRAK	525	792	-	-
	Bva06g00053	831	Gene3D	-	152	281	IPR036426	-
	Bva06g00053	831	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	8	807	-	-
	Bva06g00053	831	Gene3D	Phosphorylase Kinase; domain 1	492	597	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g00053	Bva-Chr6	1581408	1584272	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g00053	505	792	Receptor kinase-like Gene Family	AT1G60800	42.857	2.18e-70	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Bva06g00053		Pkinase	4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g00053	-		-	gmx:100815462	1059.67