Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00041 atgatttcaaatattatgaCAGATGGAAACGGTGACGTTTCAGGTTCCAATGCTGCTACTCCTGCATCTCATGCAGCAAAACGCGTGAGGCATGAAGATGAAGACGGCCTACAAAAGTTCAAAGGCGTTGTGCCTCAACAAAATGGGCATTGGGGTGCACAGATATATGCAAATCACCAGAGAATTTGGCTTGGAACTTTCAAATCTGAAATAGAAGCTGCCATGGCTTATGATAGCGCGAGCATCAAACTTCGAATGGCGGATCAGAGCCACAGAAACTTCCCATGGAATCATCAAACAGCTCAAGAATCTCATTTTCAAAGCCATTATAGCACAGAAGCAATTCTTAGCATGATTAAAAATGGCacatatcaatcaaaatttgcttcttttcttAGCAATTTTGATCAAACTCAACAATGGGAAGGCATTGAAAGAGGTGCCAACCTAATAAGGGAGAATAATGGAGATGAAAAGCACCTTTGCATCCAACTTTTTCAAAAGGAATTAACCCCAAGCGATGTGGGAAAGCTCAACAGGCTTGTTATCCCAAAAAGGCATGCAATTAGGTACTTTCCTAACGTTGGCGGCGGCGAGGAAGAGAACAATGACAATAATAGGAAGGAAAATGGTGGGGTTGGTGATAGTGCTGAGCTTGTATTTTATGACAAGTTCAGCAGATCATGGAAATTTAGGTATTGCTATTGGAGGAGCAGCCAGAGTTATGTCTTCACAAGGGGGTGGAATAGGTTTGTGAAGGATAAAAATTTGAGGGCTAAGGACATTATTGTATTTTACACTTGTGAGCAGGGAAATAGAGGCAAAGGAggccatgttttctttttgattgatgtaatctgTAATGGAGATGAAAGAAGGAATGGCTTTGGAGGGATGAGTGGATATTTGAAGCAAAATTTGGGAAATGCTAAAAGTTCATATGAAGTAGAAGATGAAGATCCTGACggagaaaatgatgaaaaggaACTGAGCACATTGCAATCATCACAAAATGTACAAAAGGGTTTGAGGCTCTTTGGTGTAcatattaacta 1055 0.3735 MISNIMTDGNGDVSGSNAATPASHAAKRVRHEDEDGLQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEIEAAMAYDSASIKLRMADQSHRNFPWNHQTAQESHFQSHYSTEAILSMIKNGTYQSKFASFLSNFDQTQQWEGIERGANLIRENNGDEKHLCIQLFQKELTPSDVGKLNRLVIPKRHAIRYFPNVGGGEEENNDNNRKENGGVGDSAELVFYDKFSRSWKFRYCYWRSSQSYVFTRGWNRFVKDKNLRAKDIIVFYTCEQGNRGKGGHVFFLIDVICNGDERRNGFGGMSGYLKQNLGNAKSSYEVEDEDPDGENDEKELSTLQSSQNVQKGLRLFGVHIN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00041 351 CDD B3_DNA 165 266 IPR003340 GO:0003677
Bva06g00041 351 MobiDBLite consensus disorder prediction 314 333 - -
Bva06g00041 351 Gene3D - 162 288 IPR015300 -
Bva06g00041 351 ProSiteProfiles B3 DNA-binding domain profile. 166 286 IPR003340 GO:0003677
Bva06g00041 351 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 12 351 - -
Bva06g00041 351 ProSiteProfiles AP2/ERF domain profile. 39 95 IPR001471 GO:0003700|GO:0006355
Bva06g00041 351 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Bva06g00041 351 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Bva06g00041 351 MobiDBLite consensus disorder prediction 1 21 - -
Bva06g00041 351 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Bva06g00041 351 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 351 IPR044800 GO:0003700
Bva06g00041 351 SMART rav1_2 39 101 IPR001471 GO:0003700|GO:0006355
Bva06g00041 351 SMART B3_2 166 276 IPR003340 GO:0003677
Bva06g00041 351 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Bva06g00041 351 Pfam B3 DNA binding domain 166 269 IPR003340 GO:0003677
Bva06g00041 351 SUPERFAMILY DNA-binding pseudobarrel domain 165 271 IPR015300 -
Bva06g00041 351 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00041 Bva-Chr6 1448578 1449633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00041 39 350 RAV Transcription Factor Family AT1G51120 50.311 1.41e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva06g00041 B3 5.6e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00041 K09287 - qsu:111998385 364.77