LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g00036	ATGGCTTCATCTTTGGAGGAGCTTCTAAAAGAGGAAGGGTTCAAAGGAAGCAGAAGGATGACAAGATCCAGATCTTCCTTCCACTCTGATGCAGCAACTATGCCCCGTTACTCTTTTCAAGATCAACAAAGGAGACTTTCAGTGTCAAGTGAAAGAATTAAGACAGAAAGAGCGAAGTCTGATGTTTCAACATATCAGATAAGAAGTGGGTTTTTAAATGGTAATAGTTCCAGGAGCAGATTAGCAAGGAATAGTCTTTTGAAAATAGGGAAAATGGAAGAAGGattgaagaatcaaaatggGGAGAAATCTTCTACAAATGCAGAGGTAAGCAAAGAATTTATCAGTTCATCAGAATGCGTGCCAAGATATGAAATAACTGAGGTGAAGGAGAAAGCAGATAAAAAAGTCAAGGATATACATTCAAATGAAGTGTCTAATGCAAggagagggaaagaaaagagtttgAATGGATTTAAGGAAAGGgagaaatggaaagaaatgCATGTGAAGGATGCAAAGGTGGAAAAGAGGCAGGGTAGTAGTTCCAATGTAAATAAGCTTGGACATATTAATGGGCATCCGAGAAACAATAATAAACGTCAGGAGAATTCATTCAATAGGTCTAATAGCAAAAGCTTTGAAGATgttcatcatcaaaatcatgGTCACGATGTACAAGCTTCTAGTTTAGCTATTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTTTAAATggatatataaaacattttctgaAAGATGAGGACTTTCGGAGTACACTGCGTCACGATTGTTTTTCCTCCTTAGATTTTATTGAACTGGATGAAGAGCATAGTACAGAGACAAAAGTAATAAGAAGTCTCGAGCAAGCAATTGAAACAATAGAACAAGCTGCTGAGGAATCTGTACCTGGGAGTGATTTGAAAAGAGCTTCATTGAAACTAAGCATTATTACAGGTTTGAATTTAAACGATTTGACATGTGGGTTTACCTGTGGGATTCCTAATTATAAGTTGTCAGCTTGTGCTCATCTTTATCTCAGTGTGTTATATAAGATGCAGAGAAAAGATAAGGTGTCTGCAAAACACCTTTTGCAAGTATTTTGTGATTCACCTCGTCAGGCGCGGACAACATTAATGCCGGAACTGTGGGAATATCTTTTTTCTCCACATCTTTCCCATTTGAAGGTATGGTACCAAAAGGAAGCTGATATTCAAGCAGGTACCACTAGCAGAACCAGGAAACTGAGGGTTCTCGAAAAGGTTTACAATGAAAATTTGGATTCTGGAACTTATCTACTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAAGCTCCCTCTATTCCTTTTATCAGCATTCCTTCAATACCTGCTTTGGAAAGTCAGCCGGGAAGTTCACATGGTCATTCTTCGGACCTTGCTAGCTCTGTTGACGCTTCCTCGCCACAGCCAATGGTCAGCAAAAAACTCTATGATGCTGTCTTTGGTAGCTTGAGTAAACCTGGAGCTGTTGGAGATGAAGATGATAAGGGAGAAGACATCCTAGGTAACAGTGTGAGAAGCCCAGATGGTCCCGCTgttgttaaaaaaacaataacataTGCATCTGAAAAGGTTAAATATACACATCAAgatattgaagaaaatttcagTACGAGTCCACCAGTCTCTACATTCCACCCtAAAGGAATGTCAGTGTCTATTGAAGAAGaatggagagaaagaaatcTCAATGATGACATTGGTAATGCTTTCATTTCCCAAAAAACTAATGTAAACAGCCACATGTTAGAAGCAAGGAAACACGGGAAAGGGAATGAAGTTACTGTCAAAACCGTTACAAGATCTGTTTTGGAATTGCAAAGCACCAAAAGCTCTTTTGATTGCACTGTTTCTACTGTTTTACAATCGAGAGAGAAATCTgttgaaaatATGCAGTCAAGTAAATTATGTTTGTCTCTAGAAGGACTACAATTTCCAAGCATCCCACAGGAATTCATTTGTCCTCTGACTGAGACTCTGTTTCAGGATCCAGTTACCCTAGAGACTGGCCAAACGTTTGAACGAGCAGCCATTGAGACATGGTTTGAAAAGGGAAACAGAACATGTCCAATAACTGGAAATACTTTAGATTTTGTAGCCATACCACAAACCAATCTTGTTTTGAAGCGTTTGATTGATAATTGGAAATCGGAACAATTGCATTGGCTCTTGGATTTTGCATCTCAAAATGTCAGAAATCCAGGGAAGCATAAATTGAAAGAAGAGGATGAGGCTAATGTTTTCAAATTAGAGAGCTTTGTTACTTCTTTGAGTGAAGAGGACAAGACAAATTATGCTAAGTATCTCATGTCTTTAGGGGTTCTAGAATTTCTTCTGAGGAGGTTTGAATTAGGGAATATGGAAGAGAAGACACGAGTGGTAGCACTCTTGCTAACTTGTATTGAAGCAGACTGTGGTTGCATATATCAGATAGCaagagaaattaacaaaaaatgtcTTCTTGAGCTTCTTCATAGCGAGGAGGTTAACCCAACAAACAATGCAGTCTTACTTCTTACTGAACTTTTGTCTCTAAAGAGgAGAAATGATGTCATTTCATTCTTGAGTGGCATGATGGGTGAAGATGTGTTCAACACAATGCACTTCCTGCTCATCTATCTTGAGAAGTCTCCACCACATCAGAAACCCCTTATTGCTGTCCTTTTGCTACACTTTGATCAACTGGTTGAGCTGGAAAAGTATAGCATATACAGAGAGCAGGCTGTTAATGCCATTGCAATGGCTCTTGATGCTAGCTTACATGATGAAAAGGTTCAAGAGAAGTGTTGCAGAGCACTTTCAATCTTGGGAGGGCTCTTTTGTTCCACTGGGAAGATATTAACCATGTCTAGCATCTTAAAGCAAGCAGgatataataatgataagtCGGAAGGGAAACCTAGTGGCGATGAAGAAGAGCCTTTACTATGGGATGGCACCATTTCATTGGAATATGAAGAACGAAGGAGAGAAGAGGGCTTGTCGAACTTGTTAGACTCATTGATTGGTGATGGAGAAAGGCCATTTTTGAAGACCGTTTCTAGATGTTTAGAATCTAAAAACCAAGATTTGGTAGAGATTTGTCTAATAACAGTTACATGGTTGAGCTCCTCACTTACTAAACCATGTAATGCTGGATTACACCTTCCTGCATTCTTAGCCGTCATCTCTCAGTTGAAAGGAATTCTGGAAAATGGAGAACTTGAACTGAAAATTCTTGCTTTGATGTCCTTGCTGAACTTCAGTAAAATATCAGAATGCAAAACTCTTTTGATGACTATGGCAGAAGATATTGCCGAACCTCTTCATCGACTCGCTGATGTAACATGGGCTGCAAAGCAGCTTCATGCTATTGTATCTGGGGCGGACCTGTA	3428	0.374	MASSLEELLKEEGFKGSRRMTRSRSSFHSDAATMPRYSFQDQQRRLSVSSERIKTERAKSDVSTYQIRSGFLNGNSSRSRLARNSLLKIGKMEEGLKNQNGEKSSTNAEVSKEFISSSECVPRYEITEVKEKADKKVKDIHSNEVSNARRGKEKSLNGFKEREKWKEMHVKDAKVEKRQGSSSNVNKLGHINGHPRNNNKRQENSFNRSNSKSFEDVHHQNHGHDVQASSLAIDEVAVQAVVSILNGYIKHFLKDEDFRSTLRHDCFSSLDFIELDEEHSTETKVIRSLEQAIETIEQAAEESVPGSDLKRASLKLSIITGLNLNDLTCGFTCGIPNYKLSACAHLYLSVLYKMQRKDKVSAKHLLQVFCDSPRQARTTLMPELWEYLFSPHLSHLKVWYQKEADIQAGTTSRTRKLRVLEKVYNENLDSGTYLLAVYYKDWLTEGVEAPSIPFISIPSIPALESQPGSSHGHSSDLASSVDASSPQPMVSKKLYDAVFGSLSKPGAVGDEDDKGEDILGNSVRSPDGPAVVKKTITYASEKVKYTHQDIEENFSTSPPVSTFHPKGMSVSIEEEWRERNLNDDIGNAFISQKTNVNSHMLEARKHGKGNEVTVKTVTRSVLELQSTKSSFDCTVSTVLQSREKSVENMQSSKLCLSLEGLQFPSIPQEFICPLTETLFQDPVTLETGQTFERAAIETWFEKGNRTCPITGNTLDFVAIPQTNLVLKRLIDNWKSEQLHWLLDFASQNVRNPGKHKLKEEDEANVFKLESFVTSLSEEDKTNYAKYLMSLGVLEFLLRRFELGNMEEKTRVVALLLTCIEADCGCIYQIAREINKKCLLELLHSEEVNPTNNAVLLLTELLSLKRRNDVISFLSGMMGEDVFNTMHFLLIYLEKSPPHQKPLIAVLLLHFDQLVELEKYSIYREQAVNAIAMALDASLHDEKVQEKCCRALSILGGLFCSTGKILTMSSILKQAGYNNDKSEGKPSGDEEEPLLWDGTISLEYEERRREEGLSNLLDSLIGDGERPFLKTVSRCLESKNQDLVEICLITVTWLSSSLTKPCNAGLHLPAFLAVISQLKGILENGELELKILALMSLLNFSKISECKTLLMTMAEDIAEPLHRLADVTWAAKQLHAIVSGADL	1142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g00036	1142	SUPERFAMILY	ARM repeat	777	1108	IPR016024	-
	Bva06g00036	1142	PANTHER	OS04G0584500 PROTEIN	1	1140	-	-
	Bva06g00036	1142	SMART	Ubox_2	669	733	IPR003613	GO:0004842\|GO:0016567
	Bva06g00036	1142	Pfam	U-box domain	666	737	IPR003613	GO:0004842\|GO:0016567
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	505	526	-	-
	Bva06g00036	1142	PANTHER	OS04G0584500 PROTEIN	1	1140	-	-
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	26	46	-	-
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	11	25	-	-
	Bva06g00036	1142	SUPERFAMILY	RING/U-box	662	736	-	-
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	145	178	-	-
	Bva06g00036	1142	CDD	RING-Ubox_PUB	670	711	IPR045210	-
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	465	487	-	-
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	11	53	-	-
	Bva06g00036	1142	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	665	741	IPR013083	-
	Bva06g00036	1142	ProSiteProfiles	U-box domain profile.	665	740	IPR003613	GO:0004842\|GO:0016567
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	179	211	-	-
	Bva06g00036	1142	MobiDBLite	consensus disorder prediction	145	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g00036	Bva-Chr6	1326158	1335987	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g00036	665	790	U-box Gene Family	AT1G23030	35.115	1.14e-14	76.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g00036	-		-	gmx:100820501	1220.3