Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02640 ATGGCAGAAGTCACCTACCTTCACCTTCACGAACCCGATGACGATCCTCATCTTCCTGAGCAAACCCTAACTCTGGATTCTATCCCGTACTGGTCTCATAACTATTTCGATTTCTATGCTTATGATCCCGATTTCCCTCTATCTGATGCTTCTCTCCATCCCCATATGGCCTACTGGGATGCTGCCTTGTCAGGACAATTCGAATCAACAATCTGTATACGAAGTGAGGATGACTTCTCGGACCCTGGTTCAATTTCAAACGCCGATCTTTTAGACCGCGAAAACCAGGTAAGTTTCGTTATGGATCTCTTTCAACAACGTGTTGAACAATCGCAGGTCATGGGCCAAAGAGATTTTGTTTCGGATAATGAATTGGGTTTTGGTGTTATTGACGGACACTGTGATGTGgatgttgatgttgatgttTTGGGGCTGGATTCGGGGTTAGATTTAGGATTTGGTGATTTCATGGTTGAAAGATACGGTTCTGTTGGAGGTGCTGGCGATGATGATGATATCTTCATTGGGAGGAGGGTTTCTGGTTCTGAACCCATTGAGGCACCGTCGACGGCAAGCGGGATGCAACCTTTGCATAACTGTGTCCGGCTTGTGGGGTTTGGATTGGATTCGGATGAGGAGGATAACGGGCTTTTGGGTCCCTATATTCATTCGGAAGATGAGTGTAATGTGTACAATGAGAACGATGATGCTGCGAGCATCCCTCTTTGTTGGGATTCGATTCAATTGGAGGATAACAGGGAGGGTAATGAAGATTTTGAGTGGGAGGAGGTGGATGGACGAGTTGATGAGAGGGAATTTCTGAGCATGTTCACGGTTGAGAATGATAGGTCTGTTTCGACTTCGGTGTCGCCAGTAATTGGGCTAGGAGAAGTAGGTGTTGTGAGGGTTGGTGGCATGGAGAATTTGGAGTGGGAAGTGCTGTTGAATGCCAATAATTTGGACACAAACCCTGATTTGGACCATGATGCAGAACCTTATTTTGGTGATCATGATGATTATATACACACTGCAGAGTACGAAATGATGTTTGGGCAATTTACTGAGAATGAGGATCCCTTAATGGGTCGGCCTCCAGCATCTCTGTCCGTTGTTCAACATCTTCCATCAGTTGTTTTGACCAAGGAGGATGTAGAGGACAATAATGCACTTTGTCCAGTTTGTAAGAATGAGTTCAATGTTGGGGAACAAGCAAAAGAGTTGCCATGTTCACATCGTTACCATGGTGACTGCATTATACCTTGGCTGGGCATCAGGAACACTTGCCCTGTCTGTCGTTTCGAGTTACCAACAGATGATGCTGATTATGAGCGTAGGAGGAGCCAAGGATCTGGCCGCAGCTA 1361 0.4541 MAEVTYLHLHEPDDDPHLPEQTLTLDSIPYWSHNYFDFYAYDPDFPLSDASLHPHMAYWDAALSGQFESTICIRSEDDFSDPGSISNADLLDRENQVSFVMDLFQQRVEQSQVMGQRDFVSDNELGFGVIDGHCDVDVDVDVLGLDSGLDLGFGDFMVERYGSVGGAGDDDDIFIGRRVSGSEPIEAPSTASGMQPLHNCVRLVGFGLDSDEEDNGLLGPYIHSEDECNVYNENDDAASIPLCWDSIQLEDNREGNEDFEWEEVDGRVDEREFLSMFTVENDRSVSTSVSPVIGLGEVGVVRVGGMENLEWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIHTAEYEMMFGQFTENEDPLMGRPPASLSVVQHLPSVVLTKEDVEDNNALCPVCKNEFNVGEQAKELPCSHRYHGDCIIPWLGIRNTCPVCRFELPTDDADYERRRSQGSGRS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02640 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 438 IPR013083 -
Bva05g02640 453 SMART ring_2 391 431 IPR001841 -
Bva05g02640 453 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 91 447 - -
Bva05g02640 453 ProSiteProfiles Zinc finger RING-type profile. 391 432 IPR001841 -
Bva05g02640 453 CDD RING-H2_RNF126_like 391 432 - -
Bva05g02640 453 Pfam Ring finger domain 391 432 IPR001841 -
Bva05g02640 453 PANTHER - 91 447 - -
Bva05g02640 453 SUPERFAMILY RING/U-box 371 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02640 Bva-Chr5 21894179 21895878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02640 1 438 C3H Transcription Factor Family AT5G60820 34.534 4.90e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02640 - - adu:107469048 500.36