Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02553 ATGCTTATGTTTGTCTTTTCTGGAAACAATTTGAACTGTGCCATAAATTATAGCAATCCTTGTGAATCTGATACACATCAAGGTTCTTcgtataaatcaaaatttaccCTTAAAGTTGGAATTATTGAAGGGCGAGTTGATATTCTTTTACTTGGTGGTATGCTGTTCTGCTGGTGTAAGGGCAGGCATAAGGGCCACAAGCGTGAGGTTTTTGTAGATGTTGCAGGTGAAGTTGGTCGGGGAATTGCATTTGGTCCACTAAGAAGATTTGCCTGGAGAGAACTACAGATGGCCACAGACAACTTCAGCGAGGAAAATGTTTTAGGAGAGGAAGGTTTTGGCAAAGATTATAAAGGCATTCTTGCAGATAACACACAAGTTGCTGTTAAAGGGTTAACTGATTTTGAAAGAACAAGGGGAGATGCAGCTTTTCAAAGGGAGGTTGCGACGACAAGCTTTGCTGTTCATAGAAACCTGTTAAGGCTGATTGGGTTCTGCACTACTCCAACGGAGCGCCTCTTGGTTTATCCCTTCATGAAGAACTTAAATGTTGCAGGTCGTCTACTTGCAGAACTTAAGCCAGGGGAATCTGTTTTAGATTGGCCTACAAGAAAACGCATGGCTCTAGGCACTGCCCACGGCCTAGAATATCTTCATGAACATTGTCACCCAAAAATTATTCATCGCGATGTGAAGGCGGCTAATGTATTACTAGATGATGATTTAGAGCCAGTTCTTGGTAAACGGGTGATTGACTTTTCTTATTTGGAAGAGGAAGATGGTGTGTCACTGCTTGACCATGTTAAGAAACTGGAACGTGAAAAAATACTAGGGGATATAGTAGACCtcaatctaaataaaaaacatacaaGAGGTTG 878 0.4009 MLMFVFSGNNLNCAINYSNPCESDTHQGSSYKSKFTLKVGIIEGRVDILLLGGMLFCWCKGRHKGHKREVFVDVAGEVGRGIAFGPLRRFAWRELQMATDNFSEENVLGEEGFGKDYKGILADNTQVAVKGLTDFERTRGDAAFQREVATTSFAVHRNLLRLIGFCTTPTERLLVYPFMKNLNVAGRLLAELKPGESVLDWPTRKRMALGTAHGLEYLHEHCHPKIIHRDVKAANVLLDDDLEPVLGKRVIDFSYLEEEDGVSLLDHVKKLEREKILGDIVDLNLNKKHTRG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02553 292 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 247 - -
Bva05g02553 292 SUPERFAMILY Protein kinase-like (PK-like) 83 246 IPR011009 -
Bva05g02553 292 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 247 - -
Bva05g02553 292 Pfam Protein kinase domain 103 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g02553 292 ProSiteProfiles Protein kinase domain profile. 102 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g02553 292 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 242 289 - -
Bva05g02553 292 SMART serkin_6 102 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g02553 292 Gene3D Phosphorylase Kinase; domain 1 72 178 - -
Bva05g02553 292 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 242 289 - -
Bva05g02553 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Bva05g02553 292 Gene3D Transferase(Phosphotransferase) domain 1 185 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02553 Bva-Chr5 20520218 20523593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02553 4 291 Receptor kinase-like Gene Family AT5G10290 56.196 2.63e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Bva05g02553 Pkinase 3.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02553 - - gmx:100793416 390.578