Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02545 ATGGCAGGAAATTATAGAATCACAATGAACCAGAAGGATACTGTGAGGTTCTTGACTACAAGCATTGATTGTTTCATTCAAGATCGGTTAATCAACAAAGAACAACGAATCCAACACAGAGAACAGTGTGGAGAAAGATTAGCAGCTGAAGATGGAAGCTGTGATAAAGACAGTGAGGTTCAATATTCTGATCAAGCAGTGTTAGCAAATCTAGATTGGGGCATTGAGGCTCTTGAAGAAGCTATTAATACTTTCAACATGGAAACTAAACTAGCCCGGCTCGGTCACGCCGAGAAGATGCTGCAAGTTTGTGCCATGTTGAATCCTAATCTGAAAACTGCTGGAGTTCCCAACTTCTATCTCTCAGCATGGGCACATCTCAATCTATCCTACTTAtggaaattaagaaacaaTACCCAAAATTGTGTTCTTCATGTTCTTGAGATGTTTACTGTTGATCCTTTCTTCTCAAGGGTTGATTTTGCTCCTGATCTCTGGAAAGAGCTGTTTCTTCCACACATGCACTCCATTGTAGGGTGGTATTCTGAGGAAAGACACAAGCTCATGATGGAAGTCATACCTGACTCTACTGATATGACTTTTACAGCTgactttgataaatttttcaatgaGTCTTTGGTCTATTCTATGAGGCCACaacaattagaaaaattgagaaagttgGAGCAGCTTTATGGAGAGTCGTTGGATGAGAATACACGACTTTATGCCAAGTACTATAAGGATTGCATCAACTCTGATTCAACCTCGAGCAAGAAGGTAGTTCCAATGTTACCAATTGCTGAACCTCCGATGACTCCTTTGCATGAGTTGAGCCGCTCGGTTCCtgattatgtaaaatttggtCCTATTTTGCCCAAAAGTGCTGGATTTTCAACAATTCTAAGATCAAAAGAAGGTGCAAATGAAACAATCAGAGTGAATGTGAATGTAACTTCAAGCCATTCACAGAAGGTGGAGGAATCATCTATATGGGGTGCTAAGGCGAGCATCACCgaagagaatgaagaagaTTCAGATTATGAACTCTATGATGCATATGCAGATTCAGATGATGCAaagcaaaatattttgtctcttgGCATGAAGGTGGCCAAGGCTGAGGATATTGAAGCAGAAGTATTTCcaccaaacaagaaaaatcaaatgcatTCTCCTACAATCTTCTCTCCCTTGGATTCTCCAAGGACTCCCTCGGTTAATTTGTCTGCAAGTCGTGATCTGCacaatgaaaaagaatccAGTGCTTTTTTGCGCTTGTTTTCTAGTCGTTTCACAGACTCAATCATTTCCACCTCTTTACCATTATCTCCACAAATGAGCACTGATCACAGTATCAGCTCAGAAGACTCTGATAATGAACATATAGGCATGAAGAATAGTGGTAGGAAGAAGTATAAAGAAGCACAAAGCGTGAATCATGAAAATgtgaatagctccaaagtgaaTGACAGTTCCATTACTGATGAGGGAAATCGGATGAGCATCCCATTGTTCGATTCAGAGAAGCTGGCTGCACGATCAAGACCCCCAAAGGATTTTGTTTGCCCTATCACAAGTCAGATATTTTCTGATCCTGTCACCCTTGAGACTGGCCAGACatatgaaagaaaagcaattcAAGAATGGCTTAAAACAGGAAACACAACATGTCCCATTACACGACAACGTCTCTCTGCGACCACATTGCCTAAAACAAATTATGTCTTGAAGAGGTTGATAACATCATGGAAGGAACAGCATCCTGAATTGGCTCAGGAGTATTCAAATTCTGACACACCTGGAGGTTCTTTGGGTTCTCCGTCTGCAAAAGACATCCCAGTGGTctctatttcaaataaaatagctGATTTACCCATTCAAAATAACACAGATAATTATAATAGCCAAAGgaccaaaaaatttatgcaGGTTACTGTCTCAACATCCCCAATTAGTGTGATATCTCAAGCTGCAGTTGAGACAATCATAAATTGTTTGAAGCCCTATGTTTCAAGTCTCTGTACATCAGAAGACTTGCAAGTGTGTGAAGAAGCTGTCTTGGCAATTGCTAGATTGTGGAGGGAATCAAAGTCGGATCTTCAGATTCATTCTTATTTATCAACGCCAGCCATTATAAGTGGTTTAGTGGAAATAATTTCTGCTTCACCGAATAGAGAAGTTCTGAGAACATCAATTTACATTCTCTCTGAGCTAGTTTTTGCAGATGAGAGTGTTGGAGAAACACTTGCCAGTGTAGATTCTGATTTTGATTGTTTGGCTTCTTTGCTTAAGAATGGTTTATCAGAGGCTGCAGTTCTTATTTACCGACTGAGGCCAGTGTATGCTCAACTTTCAGCTCATGAACTTGTTCCCTCCCTTGTCCAGCTGATcttgaacaaaaatgaagACTCGGATGATTTTCGGTTATTTATGGAGCCCAAGGATGCTGCAATAGCAATTCTTGAGCAGATTTTGGTTGGGGGAAATGAAAATAGCCGGTCGATCAATGCTATGTGTGTTATTTCAGCAAATGGAATTCCTGCCTTGCTGAAGTATTTGGATAGAATGGAAGTAAGGAGGTCCATTGTTTCAATACTTCTGTGCTGTATGCAAGCTGAAAAACGTTGCAGGAGCTTAGTAGCAAACAGGATTGAATTATCTCTTGTTCTCGAATTATTCCATGCTGGAAATGATAGCGTTAGAGGCATCTGTGTGGATTTTCTCTCAGAGCTGGTTCAACTGAATAGAAGAACATTCTGCAATAAGATATTACAGATGATCAAGGATGAAGGAGCATTTAGTACCATGCATACCTTTCTTGTCTATCTTCAGATGGCTCCTATGGAGCATCAGCTTGCTGTTGCTAGTCTTCTACTTCAGCTTGATCTCCTGGTTGAGCCACGAAAAATGAGCATTTACCGGGAAGAAGCTGTAGAGGCGCTGATAGAAGCACTTTGGCAAAAAGATTtctcaaatattcaaatgaaagCTTTAGATGCCTTACTATTTCTTACTGGTCATCTCACTTCCTCAGGAAAGTCATGTACTGAAGCCTGGTTGCTAAAGATTGCAGGATTTGATAAACATTATAATGCTTTAATGAAGGCTGAGCGGTTGGCAAAACATGACCATGATTTGCTGGAAACAATGGAGGATGAAGAAAAAGCCATGAACTCATGGCAGAAGAAGGTAGCTTTTGTGCTTTCCAACCATGAAAAGGGTTCTATATTTAAAGCTTTGGAAGAATGCCTGCGGAGTAATTCCTTAGAGATGGCAAAATCATGCCTTGTAATTGCAACATGGCTTACGCATATGCTCTCAACTCTTCCCGATACCGGTGTATGGGAAATTGCTCGCAGATCCTTGCTTGATGAACTCCTAAATGTCCTCCAATCATCCAAGAACTTGGAGGAAATGATCCTCGCATCGCTTGCTTTGAAGACCTTGATCAGTGATCCAATTGCACTTGAAGAACTTGGATCTCATGCCAAAAGCCTCTATAGAATCTTGAGAAAGCTGAAGAAGTATTCAGTGGTGGCAAGTGATATAATGAAAGCCTTAGTGAACTTGAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTACTGAAGTGGTTGAGTTAGACTTGTCCTCAAATGGTGAAGTGCTTTCTTTACTTTATCTGAATGGTCTGGTTGTGAGTGGCCACTCTGATGGAACTGTGAAGGTATGGGATGCTGGGAAGAGAGTTTTAAGATTACTTCAAGAACATCATGAACACACAAAGGCTGTAACCTGTCTCTGTTCTTCAGGGGACAAATTGTACAGTGGTTCCTTGGACAAATCCATTCGGGTTTGGACAATTAAATCTGATGAGATTCAGTGTATCCAAGTTCACGACATTAAAGATCCAGTGTACGAGTTGATAGCCAATGCTAATTTGGCGTGCTACATATCTCAAGGAACTGGAGTTAAGGTGTATAATTGGTCAGAGGTTCCAAAGCatataaatttcaacaaatatgTGAAGTGCCTTGCCATGGCTGGGGATAAGTTGTACTGTGGTTGCTCTGGTTATAGTATCCagGAGGTTGACTTGTCCTCGTACACATCAAACTCATTTTTCACTGGTACAAGGAAACTGCTGGGAAAGCAAATCATACACTCCCTCCAAATTCTTGAtggtttcttgttttttgGGGGTTCCTCAGTGGATTCAACTGCAGGAAAGATATTATCGTTATCCACCAAAGCAGTGGTAGGATCATTGTCAACAGGACTCGATATCCACCGCATAGCTATCAACGGCGACTTCATATTTTCTGGCACGAAATGTGGCACCATTGAGATCTGGTTAAAGGAGAAGTTCACCAGAGTTGCCACCATTAAAATGGCGAGTGGTCACCCAAAAATTACGTCTTTAGCCTTAGTTGCTGATGGTGGAATGCTTTTCGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGCCATA 4472 0.3886 MAGNYRITMNQKDTVRFLTTSIDCFIQDRLINKEQRIQHREQCGERLAAEDGSCDKDSEVQYSDQAVLANLDWGIEALEEAINTFNMETKLARLGHAEKMLQVCAMLNPNLKTAGVPNFYLSAWAHLNLSYLWKLRNNTQNCVLHVLEMFTVDPFFSRVDFAPDLWKELFLPHMHSIVGWYSEERHKLMMEVIPDSTDMTFTADFDKFFNESLVYSMRPQQLEKLRKLEQLYGESLDENTRLYAKYYKDCINSDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDYVKFGPILPKSAGFSTILRSKEGANETIRVNVNVTSSHSQKVEESSIWGAKASITEENEEDSDYELYDAYADSDDAKQNILSLGMKVAKAEDIEAEVFPPNKKNQMHSPTIFSPLDSPRTPSVNLSASRDLHNEKESSAFLRLFSSRFTDSIISTSLPLSPQMSTDHSISSEDSDNEHIGMKNSGRKKYKEAQSVNHENVNSSKVNDSSITDEGNRMSIPLFDSEKLAARSRPPKDFVCPITSQIFSDPVTLETGQTYERKAIQEWLKTGNTTCPITRQRLSATTLPKTNYVLKRLITSWKEQHPELAQEYSNSDTPGGSLGSPSAKDIPVVSISNKIADLPIQNNTDNYNSQRTKKFMQVTVSTSPISVISQAAVETIINCLKPYVSSLCTSEDLQVCEEAVLAIARLWRESKSDLQIHSYLSTPAIISGLVEIISASPNREVLRTSIYILSELVFADESVGETLASVDSDFDCLASLLKNGLSEAAVLIYRLRPVYAQLSAHELVPSLVQLILNKNEDSDDFRLFMEPKDAAIAILEQILVGGNENSRSINAMCVISANGIPALLKYLDRMEVRRSIVSILLCCMQAEKRCRSLVANRIELSLVLELFHAGNDSVRGICVDFLSELVQLNRRTFCNKILQMIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVEALIEALWQKDFSNIQMKALDALLFLTGHLTSSGKSCTEAWLLKIAGFDKHYNALMKAERLAKHDHDLLETMEDEEKAMNSWQKKVAFVLSNHEKGSIFKALEECLRSNSLEMAKSCLVIATWLTHMLSTLPDTGVWEIARRSLLDELLNVLQSSKNLEEMILASLALKTLISDPIALEELGSHAKSLYRILRKLKKYSVVASDIMKALVNLNSVDVTELWSCTEVVELDLSSNGEVLSLLYLNGLVVSGHSDGTVKVWDAGKRVLRLLQEHHEHTKAVTCLCSSGDKLYSGSLDKSIRVWTIKSDEIQCIQVHDIKDPVYELIANANLACYISQGTGVKVYNWSEVPKHINFNKYVKCLAMAGDKLYCGCSGYSIQEVDLSSYTSNSFFTGTRKLLGKQIIHSLQILDGFLFFGGSSVDSTAGKILSLSTKAVVGSLSTGLDIHRIAINGDFIFSGTKCGTIEIWLKEKFTRVATIKMASGHPKITSLALVADGGMLFVGSSDGKIQVWP 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02545 1490 MobiDBLite consensus disorder prediction 443 472 - -
Bva05g02545 1490 SUPERFAMILY WD40 repeat-like 1223 1489 IPR036322 GO:0005515
Bva05g02545 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 599 IPR013083 -
Bva05g02545 1490 SMART WD40_4 1203 1239 IPR001680 GO:0005515
Bva05g02545 1490 SMART WD40_4 1449 1490 IPR001680 GO:0005515
Bva05g02545 1490 SMART WD40_4 1244 1281 IPR001680 GO:0005515
Bva05g02545 1490 SMART WD40_4 1410 1446 IPR001680 GO:0005515
Bva05g02545 1490 Gene3D - 646 962 IPR011989 -
Bva05g02545 1490 Pfam WD domain, G-beta repeat 1223 1239 IPR001680 GO:0005515
Bva05g02545 1490 Pfam WD domain, G-beta repeat 1460 1489 IPR001680 GO:0005515
Bva05g02545 1490 Pfam WD domain, G-beta repeat 1250 1280 IPR001680 GO:0005515
Bva05g02545 1490 SMART Ubox_2 520 584 IPR003613 GO:0004842|GO:0016567
Bva05g02545 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1489 - -
Bva05g02545 1490 Gene3D - 1382 1490 IPR015943 GO:0005515
Bva05g02545 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1458 1490 - -
Bva05g02545 1490 SUPERFAMILY RING/U-box 515 589 - -
Bva05g02545 1490 MobiDBLite consensus disorder prediction 479 496 - -
Bva05g02545 1490 CDD RING-Ubox_PUB 521 563 IPR045210 -
Bva05g02545 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1225 1239 IPR001680 GO:0005515
Bva05g02545 1490 SUPERFAMILY ARM repeat 658 1009 IPR016024 -
Bva05g02545 1490 Gene3D - 1191 1370 IPR015943 GO:0005515
Bva05g02545 1490 MobiDBLite consensus disorder prediction 477 496 - -
Bva05g02545 1490 Pfam U-box domain 518 588 IPR003613 GO:0004842|GO:0016567
Bva05g02545 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1458 1490 IPR001680 GO:0005515
Bva05g02545 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1489 - -
Bva05g02545 1490 MobiDBLite consensus disorder prediction 454 472 - -
Bva05g02545 1490 ProSiteProfiles U-box domain profile. 516 591 IPR003613 GO:0004842|GO:0016567
Bva05g02545 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1251 1286 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02545 Bva-Chr5 20379781 20388099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02545 495 875 U-box Gene Family AT1G23030 26.154 1.34e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02545 - - gmx:100776142 2217.96