Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02526 ATGGCAGTGGCGGCGTTTGAGGGTGATGGTATGGTGGCAACAGTGAATGAGGGTGGTGGTGTAGTGGTGGTAGTGGGTGAGGGTTTTCAGAACATGGAGGATATagaaattgatcaaattgTCGATGTTCCTGATACTCCTGATAGATTAGCTGTGAGGCATATCATTGATCGGAAATATGTTAATAATCCTGATGTTGTGGatgaaaagaatgagaaaaggaTTATTGCTGAAAATGGTAAGAATAGAAGGCTTGCTATTCGTCCTGTAAACAATTCTAACAATGACAAAGTGAAGAACAGCAGTAACTGTATACATGTATCCTCGTCAAACAAATCTCATGCCTCTCAAAATGCTCCCATATTTAGGAGAGCTCCAACTGGAAATATCTTTGTTCACGAGAGAACACACTCCAATGGAGCTggaaaaatggagaaagggAAATCTACTTATACTAAGTTCCCTTCTGAATCATCTTCCCATGATGATATTTCAGTTTTAGATTTGACTGAGGAGAATGGACTGCCTCAAAGACTCAAGCAAGCTTTTTCTCATGAATCAAAAGATATTGACACACAAGACAAGATAGAATGGAATACAAGCATTGGGAGCCCTTTTCTACCACATGTTTCTGATTCATTTAATAGATCTAGCAATGCCTACCCAggaaaatgtaaaatagaaGTTAACTCACATCCTGGTTCTATTGACACTGATCGTGGAAAGAGCATTCAACTATCTGGTGGTTCTccacaaaagagagaaaagcaaTTGTCTCTACATCCTTGTGTTTCTTCAAGAGTCAATGGGCAAAGAAGATTGGTACGAAATGGTTGTATTTCACCACATAACATTGCAACAGGGGCTAAACAATTGACTGAACTGAACAGTAACAAAATCAATGAGAATGAACAAAGCAGTGCAGGGCATGTCAGCGGGCAAAAGAGGTTGGTACGAAATGGCTGTATTTCACCACATAATATTGCAACAAGGGCTAAACAATGGACTGAACAGAACAGCAATAAAGTCAATGATAATGAACAAAGCCACTCCGGGCATGCAGTCTCTAGTGATACAGTGTCTCCGATCAGTATTGATGATATAATTGCTGAAGAGAAAGGTGGCAGTAGAGCAAAGGGAAAAGAAGTACTAATTCATCCCTCATCATGTGCACATGATGCTATAACTATTGATGGAGTTACAGATAGCAGCAGCCCTGTGATCAATTGTGAAAAGGCTGATGATTCCACTCATTCAATTAGAAACGCGCTTAATAACTTCTCTGTGCGACCAGATGGTTGGAGAACTACAGGTAACCATAGGAGTACTGCTCAGCCTATATATGAGGTAACTGGGCATCATTCAAGTCGgaataatgattttaaaagcCATATTAGTGCTCACTATGAGGACAGACTGAACACAAGACATGCTGGGAGCAGTCATCGCAGCAAAAATCTACATGGTCCCTTAGGAGATCGTGCAGATCAAGCAACTTCTATGATTATTTCTGAGCCTGACCAGTTGACAGGACCTCGTCCTGCAGCTGGCACACTGACCAAAAGACAAAGGAAAGGTGGATCAACTTCGAGAGTTCCTAATGGAGTATCTGACAACtcagaaattatatttcttggtTCATCTGGGGAATCATCAACTTCAGGTTTAGATGCCATGAACAATGATGACTCAGATGCTCGCGCAAGACAGTTAGAAGCAGACGAAATATTGGCCCGTGAACTTCAAGAACAACTATATCAAGAGGGTACTTTTGGAGTTGGAGAGACTGATGAACATGTAGCATGGGAACTGCAACAAGATGAGGGGCTTTTCCATACTTTTACTGATCACCACACATCACGCCCGaGATGGCTCCAAAGGGCAACCTCAAATAGACAACCTCGTTTACCTGCTCATCAAAATCCTTTAAATAGGAGGAGGGCTGGGACTCAAGCCCCTCGCACTAATAGAATATCTCAGTTGAGAAGGGGTCTAAGTCATTCTCCTACACGTACCATATCATCTAGAGGAAGAAATCTCCGATTTCCTTTCAATATGGACGTAGACAtgAGACTTAATATATTGGAAGCACTAGAGGATCTTAGCGATATGGGAATGTCCGAGGACATCTTCCAAGTTCAACGTGATTTCAATGAAAATGATTATGAGATGCTGTTAGCACTCGATGAGAACAATCACCAACATGCTGGTGCATCTTCCAATCAAATCAGCAGTTTACCACAATCTACTATACAGACTGACAACTTTACCGAGGCATGTGCAATATGTCTCGAGACCCCAGTTAAGGGAGAAACCATTCGACATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCCTGGTTGCGTCGGAAAACATCGTGCCCTGTCTGCAAGTCATCGATCACCTG 2417 0.3997 MAVAAFEGDGMVATVNEGGGVVVVVGEGFQNMEDIEIDQIVDVPDTPDRLAVRHIIDRKYVNNPDVVDEKNEKRIIAENGKNRRLAIRPVNNSNNDKVKNSSNCIHVSSSNKSHASQNAPIFRRAPTGNIFVHERTHSNGAGKMEKGKSTYTKFPSESSSHDDISVLDLTEENGLPQRLKQAFSHESKDIDTQDKIEWNTSIGSPFLPHVSDSFNRSSNAYPGKCKIEVNSHPGSIDTDRGKSIQLSGGSPQKREKQLSLHPCVSSRVNGQRRLVRNGCISPHNIATGAKQLTELNSNKINENEQSSAGHVSGQKRLVRNGCISPHNIATRAKQWTEQNSNKVNDNEQSHSGHAVSSDTVSPISIDDIIAEEKGGSRAKGKEVLIHPSSCAHDAITIDGVTDSSPVINCEKADDSTHSIRNALNNFSVRPDGWRTTGNHRSTAQPIYEVTGHHSSRNNDFKSHISAHYEDRLNTRHAGSSHRSKNLHGPLGDRADQATSMIISEPDQLTGPRPAAGTLTKRQRKGGSTSRVPNGVSDNSEIIFLGSSGESSTSGLDAMNNDDSDARARQLEADEILARELQEQLYQEGTFGVGETDEHVAWELQQDEGLFHTFTDHHTSRPRWLQRATSNRQPRLPAHQNPLNRRRAGTQAPRTNRISQLRRGLSHSPTRTISSRGRNLRFPFNMDVDMRLNILEALEDLSDMGMSEDIFQVQRDFNENDYEMLLALDENNHQHAGASSNQISSLPQSTIQTDNFTEACAICLETPVKGETIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02526 804 MobiDBLite consensus disorder prediction 230 259 - -
Bva05g02526 804 MobiDBLite consensus disorder prediction 236 254 - -
Bva05g02526 804 CDD RING-H2_PA-TM-RING 759 800 - -
Bva05g02526 804 MobiDBLite consensus disorder prediction 331 363 - -
Bva05g02526 804 MobiDBLite consensus disorder prediction 139 162 - -
Bva05g02526 804 MobiDBLite consensus disorder prediction 505 538 - -
Bva05g02526 804 MobiDBLite consensus disorder prediction 474 493 - -
Bva05g02526 804 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 563 802 - -
Bva05g02526 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 804 IPR013083 -
Bva05g02526 804 MobiDBLite consensus disorder prediction 625 653 - -
Bva05g02526 804 SUPERFAMILY RING/U-box 758 803 - -
Bva05g02526 804 Pfam Ring finger domain 758 800 IPR001841 -
Bva05g02526 804 ProSiteProfiles Zinc finger RING-type profile. 759 800 IPR001841 -
Bva05g02526 804 MobiDBLite consensus disorder prediction 521 538 - -
Bva05g02526 804 PANTHER - 563 802 - -
Bva05g02526 804 SMART ring_2 759 799 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02526 Bva-Chr5 20159660 20172557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02526 554 804 C3H Transcription Factor Family AT1G04790 48.302 1.20e-63 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02526 - - aprc:113872307 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02526 05 20159660 20172557 Bva05g02526 05 20159660 20172557 ECH