Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02522 ATGGGAATGTCTGATGACATCTTCCAAGTTCAACGTGATTTCAATGAAAATGATTATGAGATGCTGTTAGCACTTGATGAGAACAATCACCAACATGCTGGTGCATCTTCCAATCAAATCAGCAGTTTACCACAATCTACTATACAAACTGACAACTTCACCGAGGCATGTGCAATTTGTCTGGAGACCATTCGACATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCCTGGTTGCGTCGGAAAACATCGTGCCCCGTCTGCAAGTCATCGATCACCTG 290 0.4241 MGMSDDIFQVQRDFNENDYEMLLALDENNHQHAGASSNQISSLPQSTIQTDNFTEACAICLETIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02522 96 PANTHER - 10 94 - -
Bva05g02522 96 SUPERFAMILY RING/U-box 56 95 - -
Bva05g02522 96 ProSiteProfiles Zinc finger RING-type profile. 57 92 IPR001841 -
Bva05g02522 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Bva05g02522 96 Pfam Ring finger domain 56 92 IPR001841 -
Bva05g02522 96 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 94 - -
Bva05g02522 96 SMART ring_2 57 91 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02522 Bva-Chr5 20119733 20121549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02522 4 96 C3H Transcription Factor Family AT1G04790 68.687 3.43e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02522 - - aprc:113872307 178.333