Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02516 ATGGGCATCCCACCAGCGCTGAAGCAGGAGCAGGTCGAGGAAGTGTTTTCGTTTCTCTTGGATACTGAATTCTCTTTCCGAGTTCTATATATGAGAAATGCGCTTAATAACTGCTCTGTGGGACCAGATGGTTGGAGAACTACTCGTAACCATAGGAGTACTGCTCAGCCTATATATGAGACTGATGAACATGTAGCATGGGAACTGCAACAAGATGAGGGGCTTTTCCATACTCTTACTGAGCACCACACATCACGCCCTAGACTTAATATATTGGAAGCACTAGAGGATCTTAGCGATATGGGAATGTCTGATGACATCTTCCAAGTTCAACGTGATTTCAATGAAAATGATTATGAGATGCTGTTAGCACTTGATGAGAACAATCACCAACATGCTGGTGCATCTTCCAATCAAATCAGCAGTTTACCACAATCTACTATACAGACTGACAACTTCACCGAGGCATGTGCAGTATGTCTCGAGACCCCAGTTAAGGGAGAAACCATTCGACATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCCTGGTTGCGTCGGAAAACAACGTGCCCCGTCCGCAAGTCATCGATCACCTG 608 0.4457 MKNSQRLNILEALEDLSDMGMSDDIFQVQRDFNENDYEMLLALDENNHQHAGASSNQISSLPQSTIQTDNFTEACAVCLETPVKGETIRHLPCLHKFHKDCIDPWLRRKTTCPVRKSSIT 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02516 120 CDD RING-H2_PA-TM-RING 75 114 - -
Bva05g02516 120 PANTHER - 21 118 - -
Bva05g02516 120 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 21 118 - -
Bva05g02516 120 Pfam Ring finger domain 74 114 IPR001841 -
Bva05g02516 120 SMART ring_2 75 115 IPR001841 -
Bva05g02516 120 SUPERFAMILY RING/U-box 74 114 - -
Bva05g02516 120 ProSiteProfiles Zinc finger RING-type profile. 75 116 IPR001841 -
Bva05g02516 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02516 Bva-Chr5 19966642 19969723 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02516 6 120 C3H Transcription Factor Family AT1G04790 63.793 3.79e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02516 - - lang:109336293 205.682