Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02472 atGACATTCTCCATTCCTATTTTAATAGTACTACTGCTCATGATTGGTGTTAATTCCTATGGCATATGCCTTGCAGTAATCGTCGCTTCAAGCACATGGTTATCCTCAAACGAAGAAGGAAAAGCTTTGCATAGATGCCACGGTTGGGGTGGCCACAATATCTCAAACCATTGCAATTGGGCTGGTATTGTGTGCAATCATGCAGGGAGCATAACAAATATTTCAACACCGAAGAACATTTCTCTCTCAGAACTATTCCTCTCTGATTTTAACGCAATTGTTCTCCCAAACTTAGTCCATTTAGATCTTAGTGAAATGGGATTAATAGGAAGTATCCCTACTGAAATGGGTGCTCTAAACAAACTCACCTATCTCAACCTCTCACGTAACAATCTCACAGGTGAGTTACCCTCTACAATTGCAAATCTCACTAAACTTGTGATGCTTGATCTTTCTTCCAATTCAATTAGTGGTGAGATTCCTCatgaatttatcaatttgaagaAACTTGTCTTGTTGAATTTGAGTCGAAATAGCTTCAATGGATCCATACCATCTGAGATTGGATATAGCTCTAGTCTTAAATTTCTTGATCTTTCCAACAACAATCTCCATGGAAACATCCCATCTGGTCTTCTGAATCATTGCCATTACCTGAAACTATACAATAACTTCTTGAATGGAAGTATCCCCTCTTCTAGAATAAGCAATATTCCTTACCTGGATCTGAGTTATAACAACCACACAAGCAAAATACCTGAGAATACTACTAGTTATATGCTCAGAGTTCTCAATGCTTTCATTCTTGGTGCTTTTGTGGCCTGTAGTGTCTTCTATGTGATTATGTTCCTGTTTGCAGCCGAGGACCTCAAAAATgcagaaagaagaataaaatacgaggaaagaaaaggaaagaatgaaGACTCATTCTCAATCTGGAACTATGATGGTAAAGTTACGTATGAAGATATCATTGAAGCAACAAATGACTTTGATATTAAGTATTGTATAGGCACAGGAGCTTATGGTAGCGTCTATAAAACACAACTACCAAATGGAAAGATTGTTGCGGTAAAGAAACTCCATAGAATGGAATCTGAAAATCCATCTTTTGATAAGAGTTTCCGCAATGAGGTGAAGATGTTAACAGAAATCCGCCATCGGAACATTTTGAGGCTTTATGGGTTTTGCTTGCACAAGAGAAATATGTTTTTGGTTTATGAATATATGGAAGGAGGAAGCTTGTCTTTTGTCTTGGCAAATGATGGAGAAGCTTTCAAATTGAATTGGAGCAAGAGGGTTAATATCATAAAGGGCATAGCCAGTGCTTTGGCTTATATGCATCATGATTGTACCCCAGCAATGATCCATCGTGATATAACCAGTAGCAACATTTTGTTGAACTCCAAGTTGGAGGCTTTTTTGTCTGATTTTGGAACAGCTAGATTCCTTcatccagaatcatccaatcaaACTCTGCTAGTTGGCACTTATGGATATATTGCCCCAGAACTTGCTTATACATTTAGAGTGACAGAAAAATGCGACGTCTATAGTTTTGGAGTGGTTGCATTAGAAATTATGATGGGGAAACATCCAGGagattttatttcaacattaTCAAAGCCTTCTACTCAAATGCTAAGGGATGTTTTGGACTCACGTATACCACTTCCTTTCTTTCGGAGAGATGCGCAGGATGTGGTTCTTGTGGTAACCCTAGCATTAGCATGTTTGCGTTCGTCGCCCAAAGCTAGGCCATCTATGCAACAAATAGCTCAAGAACTGCTGGTTTCCAAGCCACTGGTTTATTTACCCTTTAATGATGTCTCAATTCAACAGTTGAAGAATCAAGTTTATATCTTGTA 1868 0.3667 MTFSIPILIVLLLMIGVNSYGICLAVIVASSTWLSSNEEGKALHRCHGWGGHNISNHCNWAGIVCNHAGSITNISTPKNISLSELFLSDFNAIVLPNLVHLDLSEMGLIGSIPTEMGALNKLTYLNLSRNNLTGELPSTIANLTKLVMLDLSSNSISGEIPHEFINLKKLVLLNLSRNSFNGSIPSEIGYSSSLKFLDLSNNNLHGNIPSGLLNHCHYLKLYNNFLNGSIPSSRISNIPYLDLSYNNHTSKIPENTTSYMLRVLNAFILGAFVACSVFYVIMFLFAAEDLKNAERRIKYEERKGKNEDSFSIWNYDGKVTYEDIIEATNDFDIKYCIGTGAYGSVYKTQLPNGKIVAVKKLHRMESENPSFDKSFRNEVKMLTEIRHRNILRLYGFCLHKRNMFLVYEYMEGGSLSFVLANDGEAFKLNWSKRVNIIKGIASALAYMHHDCTPAMIHRDITSSNILLNSKLEAFLSDFGTARFLHPESSNQTLLVGTYGYIAPELAYTFRVTEKCDVYSFGVVALEIMMGKHPGDFISTLSKPSTQMLRDVLDSRIPLPFFRRDAQDVVLVVTLALACLRSSPKARPSMQQIAQELLVSKPLVYLPFNDVSIQQLKNQVYIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02472 622 Gene3D Phosphorylase Kinase; domain 1 291 409 - -
Bva05g02472 622 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Bva05g02472 622 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 110 616 - -
Bva05g02472 622 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 35 257 - -
Bva05g02472 622 SUPERFAMILY L domain-like 56 255 - -
Bva05g02472 622 ProSitePatterns Tyrosine protein kinases specific active-site signature. 455 467 IPR008266 GO:0004672|GO:0006468
Bva05g02472 622 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 35 257 - -
Bva05g02472 622 ProSiteProfiles Protein kinase domain profile. 331 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g02472 622 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Bva05g02472 622 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 110 616 - -
Bva05g02472 622 Gene3D Transferase(Phosphotransferase) domain 1 410 601 - -
Bva05g02472 622 SUPERFAMILY Protein kinase-like (PK-like) 310 597 IPR011009 -
Bva05g02472 622 Pfam Protein kinase domain 335 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g02472 622 Gene3D Ribonuclease Inhibitor 34 158 IPR032675 -
Bva05g02472 622 Gene3D Ribonuclease Inhibitor 159 263 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02472 Bva-Chr5 19434397 19436509 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02472 95 503 Receptor kinase-like Gene Family AT4G08850 42.857 9.23e-104 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva05g02472 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02472 - - vra:106773464 628.632