Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02421 ATGACCACCCCGACAACTCACATCCTCCACCACACCTCCGCCTTCATCTCCACCGTGCTTTCCAAGTCCGAACTCCGGCGCCACCTTCTTTCAACTCTTCAACGTGAACTCTCGATCTCCAGCCATGTCAACCTCAAACACCTCAATCTTGTTATTGATACTCTAGAAAACGCCATTGCTGTCTCCAGCCCCACCACTCGATCCTCCTCCCTCAACCTCGCCGAGaagcttcttcttcctctccccGAAAACCCTATTTCTCACTTCCTCCTCTCTATAATCCACACCCTACGCAACCAACCCATTAACGCCGCCTTAAGTCTCCTCCAAATCTTCCATTCAAACCCTTCATTGGCCAGAACAGAAATCGCTCCCGTTCTCTATGAGAACCTATTTTCTGTCCATCTTTTCCCTGTTTTCCAGTGGTTCAATGAGCAAAGAACGATGGTTTTGTCTTCCACTTTGCCTGATCATGCTGATGCTACTTGTGATTCCTCGGTTTCATTTCAATCTGTGGTGTTACCGTGTTCGAAACTGCTCTCAAGAATAAGCGAGGatcaaactttgaagctcAGAGTGTTGGAGAGAGAGTATGAAGAGGTTATTGATGAGAATTGCAGGGCTGTGGCAAAGCATTTCAAAGAAGTTTTGgagaataaaaatggaaacccATCACTTAGTTCACCGTTATTGATGGTAAAGAGCAGTGGAAATGGAGATAAAGTGGGCAGCAGTCAAGAGGAGATAGTGGAAACGACAATGCCTGTGTTGGAGAACGGACGGTATAATCCAATATGGGCAGAAAGGGAAAATTCTATTGAATTTCTGAGCAGCAGTAGCAGCAACAGTTCCATGTATCCTCAGAGAGTTTTTCCCATGTCCATCAAACACCGGAAATCTTggaaaaaattgacaataacaGCTGATTTAAACTCAAGCACTGAACTTGACCCTACATTGGAAGAAAATTTACCTTGTTCTTCATCAGAATCTGAAGCCGAAAATAAGgaaaagaacaaaaagatggACATTTTAGAACCTCGACGAAGCCAAActcaaagagagaaaatgcagaaaaatttTGCAGAAACCAAAGGTTCTTTAGATTACCTTATGGAAGATTATGATAATCAATCTCATGGAAATGGGAAGCAAGCACCTCCAAAGGACTTTGTGTGTCCAATAACCAGTTATCTATTTGATGATCCGGTTACTCTTGAGACTGGCCAGACATATGAACGTAAAGCTATTGAAGAATGGTTCAATAGGGGAAACTCAACTTGTCCTATCACGCGCCAGCAGCTGCAAAGCACACAGCTACCTAAAACAAATTATGTGCTCAAAAGACTAATTGCAAGCTGGAAAGAGAACAACCCAGATTATTCGATCTCATCGCCTATTGTGAATCCTTATGCAGAAACTGAGCCTGAAAGCAAGCCAGAAATGCCTTCAACTTCTCCTGATAGTGTTATTACACATGCCACAGTTGATGGGATGATTAATGAGCTGCGTCATGCAATTGAGAATCTTTACTTGTCTGAGATTCTTGAGGAATCCGAAATGGCAGTGCTTCGGATTCAGCAGTTCTGGAAAGAAGAGAATCTGGGAATTGACATTCACAGCATGCTATCAAAACCTCCTATCATTAATGGTTTTATGGAGATTCTCTTTAACTCTGTTGATCCACAGGTGCTGAAAGCATCAGTTTTCCTCCTTACTGAGATGGGTTCAAGAGATAATGCTGTTGTTCAGACACTCACCCGTGTGGATTCTGATGTAGAATGTGTCATGGCTCTCTTTCAGAAAGGGTTGACAGAAGCTATTGTGTTGATATATCTCTTGAAACCTTTCCCTGTGAGTCTCGCGGAGATGGCAATGTTGGAGTCTCTTCTAGCAGTTTTCaccaagaaagaagaggaCCTGGTTAAGATGTGCATGAGTCCTATGACGGCTGCAGTGCTTTTGCTGGCAGATATTATTGCAGGCAGTGAGGAGAGGACTGGATCTTCAGTTGCCAACACTGTGATGTCTGATAAGGAAGTGATGGGAAGTCTTGTTCGCAGTTTACGAGCCGAAATAGCAGAGGAGAGGATTGCTGCAGTGGAGATATTACTAAGATGCATGAAAGAGGATGCGGCTTGCAGGAATACAATTGCTGAAAATGCAGATGTATCTGCTATTTTGGGAAGCTTCAACAATGCAACTGATGGACAACGTTTTAAgattgttcaatttttttcagaGCTAGTCAAATTAAATAGAAGGATATTTATTGAACAAATCCTCTATGTTATAAAGGAAGAAGGTTCTTTCAGTACAATGCACACTCTTCTCATTTATCTGCAGACAGCCAGTGAAGAGCAATCTCCAGTCGTGGCCGGCCTTTTACTTCAATTGGATCTTTTGGTAGAGCCAATCAAAATGAGTATATACCGTGAAGAGGCAATGGATGCTCTCATTTCATGTCTCAGAAACACTGATTCCCCAGCTTCACAAATAGCAGCTGCTGAGAAAATTGTGTCATTGCAAGGGAGGTTCAACAGCACTGGACAGCCTCTTACCAGAGAAATTCTTCTTAAACGCAGTGGCCTTGGCAGAAGTTCTAAAAGCTTTATTGAGATGGATCAGATCAGCGATTTTTCCGAAGAATCTGAAATAAATCCAGAAGAAGAACTTGCAGCTGAGAAATGGGAAAGAAAAGTTGCATCTGTTCTAGTTGGCCATGACTTTGGTCTAATTTTTGAGGCTTTAGCAGATTGCTTGAGGAGCCGTAATGCAGAACTAAGTTCACCATGCTTCATATCAGCTACATGGCTCGTATACATGCTCAGCATTCTACCAGATACAGGAATACACAGTGCGGCTCGCGTCTGCTTGCTCAAGCGCTTCATATCTATATTAAAGACTGCTAAGGACACAGACGATAAAGTCCTTTCTATGCTTGCTATAAATAGCTTTATTCAGTTCCCTGACGGGTTGCGTGATCTTACTACCTATGCTAGGGATGTCTTAAAATGTTTGAGAGAACTAAAGAAATCATCTCAGTTGGCATCTGAAATGCTTAAAGTTTTGGTCGACGACCAGGAATCTCAAGCAGACATGTGGATGCATAAAGAGTTAACCCAGATAAATTGCAATGAGAATGGAGAAGTATTTTCTATCATCTGCCTTAAGGATAAGATTATTTCAGGCCATGCAGATGGAACTATGAAGGTTTGGAAAGTAAAGAACAGCATGTTCCAGCTTGTGCAAGAGACTCAAGAACATACAAAGGCTGTTACAAGCTTGGTGGTTTCGGAATCTGGTGAGAGACTATATAGCGGTTCACTTGATCGAACAACAAagGTCTGGTCTATTGGAAATGCATCAATACATTGTGCCAAAGTGCATGATATGAAGGATCAAGTTCATAGTTTAGTTGTATCCGATAGCACATCTTGCTTCATTCCTCAGGGCACTGGTGTAAAGGTTCAATCAATGAATGGAGAGTTAAAGTTATTAAACTCCAAGAAATATGTGAAGTGCTTGGCTCTTGCCCATGGCAAACTATACTGTGGATGCCATGACAACAGCATTCAGGAGCTAGATTTGGCAACAGATGCAGTCAACAATATTCAAATTGGTTCTAAGAAATTACTTGGGAAAGCGAATCCAATTCATGCAATGAAAATTCATGGTGAATATTTATATGCAGCCAGCTCTTCCTTGGATGGAGTTACTGTAAAGGTATGGAACACTTCTGATTACAGTGTGGTTGGGTCACTGCGAACCGCATTGGAAGTGAGGGCTATGGCAGTGAGCTCACAACTCATTTATTTGGGAAGCAAAGGAGGAGCTTTGGAAATTTGGGATAGAAAGAAACTTAATAGACTTGACAATTTACAGACTTGTACAAGTGGTAACGGTAGGGTTCTTTGCATGGCTCTTGATGgcaatgaagaaattttggtGATTGGAACTTCTGATGGCCAAATTcagGCATGGGGAATATA 3992 0.4038 MTTPTTHILHHTSAFISTVLSKSELRRHLLSTLQRELSISSHVNLKHLNLVIDTLENAIAVSSPTTRSSSLNLAEKLLLPLPENPISHFLLSIIHTLRNQPINAALSLLQIFHSNPSLARTEIAPVLYENLFSVHLFPVFQWFNEQRTMVLSSTLPDHADATCDSSVSFQSVVLPCSKLLSRISEDQTLKLRVLEREYEEVIDENCRAVAKHFKEVLENKNGNPSLSSPLLMVKSSGNGDKVGSSQEEIVETTMPVLENGRYNPIWAERENSIEFLSSSSSNSSMYPQRVFPMSIKHRKSWKKLTITADLNSSTELDPTLEENLPCSSSESEAENKEKNKKMDILEPRRSQTQREKMQKNFAETKGSLDYLMEDYDNQSHGNGKQAPPKDFVCPITSYLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQQLQSTQLPKTNYVLKRLIASWKENNPDYSISSPIVNPYAETEPESKPEMPSTSPDSVITHATVDGMINELRHAIENLYLSEILEESEMAVLRIQQFWKEENLGIDIHSMLSKPPIINGFMEILFNSVDPQVLKASVFLLTEMGSRDNAVVQTLTRVDSDVECVMALFQKGLTEAIVLIYLLKPFPVSLAEMAMLESLLAVFTKKEEDLVKMCMSPMTAAVLLLADIIAGSEERTGSSVANTVMSDKEVMGSLVRSLRAEIAEERIAAVEILLRCMKEDAACRNTIAENADVSAILGSFNNATDGQRFKIVQFFSELVKLNRRIFIEQILYVIKEEGSFSTMHTLLIYLQTASEEQSPVVAGLLLQLDLLVEPIKMSIYREEAMDALISCLRNTDSPASQIAAAEKIVSLQGRFNSTGQPLTREILLKRSGLGRSSKSFIEMDQISDFSEESEINPEEELAAEKWERKVASVLVGHDFGLIFEALADCLRSRNAELSSPCFISATWLVYMLSILPDTGIHSAARVCLLKRFISILKTAKDTDDKVLSMLAINSFIQFPDGLRDLTTYARDVLKCLRELKKSSQLASEMLKVLVDDQESQADMWMHKELTQINCNENGEVFSIICLKDKIISGHADGTMKVWKVKNSMFQLVQETQEHTKAVTSLVVSESGERLYSGSLDRTTKVWSIGNASIHCAKVHDMKDQVHSLVVSDSTSCFIPQGTGVKVQSMNGELKLLNSKKYVKCLALAHGKLYCGCHDNSIQELDLATDAVNNIQIGSKKLLGKANPIHAMKIHGEYLYAASSSLDGVTVKVWNTSDYSVVGSLRTALEVRAMAVSSQLIYLGSKGGALEIWDRKKLNRLDNLQTCTSGNGRVLCMALDGNEEILVIGTSDGQIQAWGI 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02421 1330 CDD RING-Ubox_PUB 391 433 IPR045210 -
Bva05g02421 1330 MobiDBLite consensus disorder prediction 331 358 - -
Bva05g02421 1330 SUPERFAMILY ARM repeat 23 846 IPR016024 -
Bva05g02421 1330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1086 1119 - -
Bva05g02421 1330 Gene3D - 1032 1145 IPR015943 GO:0005515
Bva05g02421 1330 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1329 - -
Bva05g02421 1330 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1329 - -
Bva05g02421 1330 ProSiteProfiles U-box domain profile. 386 461 IPR003613 GO:0004842|GO:0016567
Bva05g02421 1330 SUPERFAMILY RING/U-box 384 459 - -
Bva05g02421 1330 SMART Ubox_2 390 454 IPR003613 GO:0004842|GO:0016567
Bva05g02421 1330 MobiDBLite consensus disorder prediction 316 358 - -
Bva05g02421 1330 MobiDBLite consensus disorder prediction 316 330 - -
Bva05g02421 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 465 IPR013083 -
Bva05g02421 1330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1297 1330 - -
Bva05g02421 1330 Gene3D - 1146 1330 IPR015943 GO:0005515
Bva05g02421 1330 Gene3D - 507 1031 IPR011989 -
Bva05g02421 1330 Pfam U-box domain 388 458 IPR003613 GO:0004842|GO:0016567
Bva05g02421 1330 Coils Coil 184 204 - -
Bva05g02421 1330 Pfam WD domain, G-beta repeat 1081 1118 IPR001680 GO:0005515
Bva05g02421 1330 SMART WD40_4 1079 1118 IPR001680 GO:0005515
Bva05g02421 1330 SMART WD40_4 1036 1074 IPR001680 GO:0005515
Bva05g02421 1330 SMART WD40_4 1160 1196 IPR001680 GO:0005515
Bva05g02421 1330 SMART WD40_4 1209 1245 IPR001680 GO:0005515
Bva05g02421 1330 SMART WD40_4 1248 1284 IPR001680 GO:0005515
Bva05g02421 1330 SMART WD40_4 1290 1329 IPR001680 GO:0005515
Bva05g02421 1330 SUPERFAMILY WD40 repeat-like 1059 1329 IPR036322 GO:0005515
Bva05g02421 1330 Coils Coil 691 711 - -
Bva05g02421 1330 ProSiteProfiles Trp-Asp (WD) repeats profile. 1086 1119 IPR001680 GO:0005515
Bva05g02421 1330 ProSiteProfiles Trp-Asp (WD) repeats profile. 1297 1330 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02421 Bva-Chr5 18814358 18822907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02421 388 512 U-box Gene Family AT5G42340 36.800 2.20e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02421 - - gmx:100808867 1664.43