Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02342 ATGACAAGCGATACAACGTATTCTCCGAACGACAAGAGCTTGTCACCGATTCCCAACCTCGACATCATGaTAGAGGAAGGATCACCTAACAGTGAGCAACTGCTCGAGGATGAGGGCAATGACCTTGACAATGACCATGGGCAATTGTATCAGTTTGATGGAAGTGAAcatgaaaatgaaggaaatgaaatGACAATAATTGATGGTCATGATCGAGAATCTCATGGAAAAGAATACCCGCCACCATTTGAAGGGATGGAGTTTGAAACCTATGATGATGCTTACAACTACTATAATAGCTATGCCAAGGAACTTGGATTTGCTATAAGGGTAAAATCCTCATGGACGAAACGTAACAGCAAAGAGAAGCGTGGTGCTGTACTCTGCTGCAACTGTGAGGGTTTCAAAACACTTAAAGAAGCAAATAGTCGTaggaaagaaacaagaacAGGCTGTTTAGCAATGATCAGGTTGAGGTTAGTTGAATCGAATAGGTGGAGGGTGGATGAAGTAAAGCTTGAGCATAATCATTCCTTTGATCCGGAGAGAGCACAAAACTCtaaatcacataaaaagaTGGACAATGGGGCCAAAAGAAAGGCTGAGCCTGCTCTAGATGTCGAAGTACGAACCATAAAGCTATATAGAACATCTGCTGTAGATGCATCAGGTTATGGAAGTTCAAATTCTAATGAAGGAGGAAGTGGCAATGACGTTAATTTTTCCAGGCGTTTGAAACTTAACAAAGGAGATACAGCACTCATTTCGAATTACTTCTGCTGCTGTCAATTGTTGAATCCAAATTTTTTCTATGTGACAGATCTGAACGATGATGGACAATTAAGGAACATCTTTTGGATTGATTCTAGATCTAGGGCTGCTTATGCTTACTTTGGCGATGTGGTTGCATTTGACTCAACATATTTGTCAAACAATTATGAGGTTCCGCTGGTTGTATTTGTTGCTGTTAATCACCATGGGCAATCCATTTTGCTCGGATGTGGCCTGCTTGCGGATGAGACATTAGAGACATACATATGGTTATTTAGGGCCTGGCTTACATGCATGTCTGGTCGCCCTCCACAGACTATTATCACAAACCAGTGTAAGGCCATGCAAACTGCAATAGCAGAGGTTTTCCCAAGAGCTCAGCATAGAATTTCTCTCTCCCTAGTCATGCAGAGCATTCTTGGAGATTTGGCACAGTTGCAGGAGTACGAGGCATTGCATATGACATTGACTACAGTCATATATGATTCAAAAACAGTGGATGAATTTGAGAGGGCTTGGGACGATTTAACCCGGCGATTTGGATTTAGGAATAACGAGAAGCTCCAAACCTTGCATGAAGAACGAGAGCGTTGGGCTCCAGTTTACGCAAAGGATATATTTCTGGCTGGACTTATTGATTACGAGAAGGGTGAGTCCACAATTCCATTTTTTAATGGTTATGTCCATCAACAAACTTctttgaaagaattttttgacatttacGAATTAGTCCTACAAAAGAAGCATCAGAAAGAAGCTTTTGATGATTTGGAGTCAAGAGACTCAACTCCCCTGTTAAAAACAAGTTGCTACTGTGAGTTGCAACTCTCAAAGTTGTATACAAACAATATATTCAGAAAGTTCCAAGAAGAGGTGGTGATGATGTCGTCTTGTTTCGGCAACAGCCAAATTCAAACCAACAAGTCAACAGTTACATACACAGTAAAAGAACATCGAGGGGACGAATCGACGAGGGACGTGAGGCATTTCGAAGTCATATATGATAAAGCAGCAGCAGAAGTCCGCTGCAACTGTGGTTGCTTCAACTTCAAAGGCTATCTATGCCGGCACGCCTTGTGTATCCTTAATTACAATGCTGTGGAGGAAATTCCGTGCCAGTATATTCTGTCAAGATGGAGGAAAGATTATAAACGCTTGTACGTACCTCATCTTGGCTCCAATAATGTCGATATTACCAACTCTGTTCAGCGTTTTGATCATTTGTACAGACGAGCCATGCAAGTTGTTGAAGAGGGGATGATATCCCAAGATCACTATATGGTTGCCTGGCAGGCATTTAAAGAGTCTTTGAATAAGGTTCGCCTTGTAGCAGACAAGACTGAATCAGGGAACCAAGACTCTTGTTTATA 2141 0.4045 MTSDTTYSPNDKSLSPIPNLDIMIEEGSPNSEQLLEDEGNDLDNDHGQLYQFDGSEHENEGNEMTIIDGHDRESHGKEYPPPFEGMEFETYDDAYNYYNSYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEANSRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKKMDNGAKRKAEPALDVEVRTIKLYRTSAVDASGYGSSNSNEGGSGNDVNFSRRLKLNKGDTALISNYFCCCQLLNPNFFYVTDLNDDGQLRNIFWIDSRSRAAYAYFGDVVAFDSTYLSNNYEVPLVVFVAVNHHGQSILLGCGLLADETLETYIWLFRAWLTCMSGRPPQTIITNQCKAMQTAIAEVFPRAQHRISLSLVMQSILGDLAQLQEYEALHMTLTTVIYDSKTVDEFERAWDDLTRRFGFRNNEKLQTLHEERERWAPVYAKDIFLAGLIDYEKGESTIPFFNGYVHQQTSLKEFFDIYELVLQKKHQKEAFDDLESRDSTPLLKTSCYCELQLSKLYTNNIFRKFQEEVVMMSSCFGNSQIQTNKSTVTYTVKEHRGDESTRDVRHFEVIYDKAAAEVRCNCGCFNFKGYLCRHALCILNYNAVEEIPCQYILSRWRKDYKRLYVPHLGSNNVDITNSVQRFDHLYRRAMQVVEEGMISQDHYMVAWQAFKESLNKVRLVADKTESGNQDSCL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02342 713 ProSiteProfiles Zinc finger SWIM-type profile. 587 623 IPR007527 GO:0008270
Bva05g02342 713 SMART 26again6 598 625 IPR006564 GO:0008270
Bva05g02342 713 Pfam MULE transposase domain 301 394 IPR018289 -
Bva05g02342 713 MobiDBLite consensus disorder prediction 177 201 - -
Bva05g02342 713 MobiDBLite consensus disorder prediction 1 15 - -
Bva05g02342 713 MobiDBLite consensus disorder prediction 1 43 - -
Bva05g02342 713 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 30 702 - -
Bva05g02342 713 Pfam SWIM zinc finger 597 616 IPR007527 GO:0008270
Bva05g02342 713 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 702 IPR031052 GO:0006355
Bva05g02342 713 Pfam FAR1 DNA-binding domain 96 180 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02342 Bva-Chr5 17923443 17927233 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva05g02342 MULE 9.3e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02342 K17604 - gmx:100796448 1115.52