Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva05g02328 | ATGGACGCCGAACCACCAGTGAGCTCTTCTAAGCCTCGGCAGGGAAAGGCCAAGAGAAAAAGAACTCAGCAAGATGCAGAACTCGAACGATTTGATTCACTAACATGGAACTCCTCTCTTCCTGAGGATGGCCTTTCTATGCTAATTGGCTCGAATGAACTCGAAGGAGGTTTTCTTTCACTTGAAGAGATTGACGAATCTCACTATAATTTGGGGATTCCTAAACATAAAGAAGGCAAGAACAAGTCTAAACGGGACACAAATTCAAAGAAACAGAAGAAGGGCCAAACTGATGGCCCTTGTAGTGACATTGTTGAAGCCAAGTTTGAAGGTGAAGTCGTGAAGGATGAGGATGTGAAGtctaaaatgaagaaaaaaaagaagaaaaagaaggaagctGGAGAAAAACAGAAAGTCGAGGCACCTGCTTCTGACATAGTTCATGACTCAAAGGACGATATTGAGGAAGGGGACGTTGATGAAACTGAATTTTATGCTTGGAACGAATTGAGGCTTCATCCTCTGTTGATGAAAGCAATATATGAGCTAGGCTTCAAAGAGCCAACACCAATACAGAGAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGGAAGACACTTGCATTTGGTTTGCCTATTCTGCAACGCCTTTTGGAGGAGCGAGAAAAGGCTACAAAGATGCATGAAGAAAGGGGTGAAGAACCAGAAAAGTACTTTCCTTCAGGCATTTTGAGGGCTCTAATTATTACTCCAACTAGGGAACTTGCAATTCAGATCACTGATCATCTGAAAGCAGTAGCCAAGCATATCAATATTAGGGTGACTCCTATAGTTGGGGGGATCTTGGCTGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCAGAGATTATTGTTGGAACTCCAGGGAGGTTATGGGAACTTATGTCTGCTGGCGAAAAGCATCTAGTTGAGTTACACtcattgtctttcttcgtgctTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGATATGTTACCCATGTCTAATGTATCTGTTGTAGATAATCCTCAAAATCCACAAAATTGTGTTACAGTTTCAAGCtaccaaagaaagaaaagacaaaccCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTCCGCAAGAAGCTAAAGCATGGTTCTACAAAACCAAAGCAAAGCATGTCTGATGGATTCAATTCTATTGAAACTCTTTCTGAACGGGCTGGAATGAGAGCCAATGCTGCAATCATTGATCTAACTAATTCATCAATATTAGCAGCTAAGCTTGAGGAGTCATTTATCGAATGCAAGGAAGAAGATAAAGATGCTTATTTGTATTACGTTTTGACCGTTCATGGGCGAGGTCGCACAATAGTATTTTGTACGTCAATTGCAGCTTTGCGCCATATCTCTTCCCTCCTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGCTtaaagTCCATTGATCGCTTtcgtgaaaatgaaaatggcatTCTTGTAGCCACTGATGTTGCAGCTAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAAGTATATGTTCATAGAAGTGGAAGAACAGCGAGAGCTTCTGCTGAAGGGTGCAGCATTGCTTTGATCTCACCAAGAGATACATCAAAATTTGCTTCGTTGTGCAAGTCATTTTCTAAGGATAATTTTCAGCGATTTCCTTTAGAGAGCACTTACATGCCAGAGGTCCTTAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAGTAAGGAAGGATTCCCAGgagaaagcaaagaaaaactgGTTTGAAAGGAATGCTGAATCTGTAGAACTAGTGACTGAGAATTATGACAGTGAAGAGGAAAGAGTGAACAAACATAAGCAAATGAAAGCAAGCTCTATAAAACTGAGGACATTGGAGGAGGAGCTCAATGTGCTGCTTTCACGTCCTTTAcaatcaaaaacattttcacaTCGTTATTTAGCAGGGGCTGGTATCACTCCTCTCATGCAGGAACAGTTCCAACAACTAGCCAGGCAAAAGCAAGGTGATTCCGAAAGTTCAGGAGTTAACAGAAAGGGGAAATTGGTTGTGATTGGTCAGGATTGTGTGGAAGCACTTCAGGCACTGCGGAGTGCCGGCGAAGAGGTGAACGTGGATCTTAAAGATATGGCAGAGAAACGCAGAAACACGGAgaatttaagaagaaagagaaaggaagagaagaaacgCTTGCGTGATCAGCGGAGAAAGCAGAGGAGAAAGCTTAAACATAATGACGAGGATGAATA | 2408 | 0.3966 | MDAEPPVSSSKPRQGKAKRKRTQQDAELERFDSLTWNSSLPEDGLSMLIGSNELEGGFLSLEEIDESHYNLGIPKHKEGKNKSKRDTNSKKQKKGQTDGPCSDIVEAKFEGEVVKDEDVKSKMKKKKKKKKEAGEKQKVEAPASDIVHDSKDDIEEGDVDETEFYAWNELRLHPLLMKAIYELGFKEPTPIQRACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKATKMHEERGEEPEKYFPSGILRALIITPTRELAIQITDHLKAVAKHINIRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNVSVVDNPQNPQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKHGSTKPKQSMSDGFNSIETLSERAGMRANAAIIDLTNSSILAAKLEESFIECKEEDKDAYLYYVLTVHGRGRTIVFCTSIAALRHISSLLRILGINVWTLHAQMQQRARLKSIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDNFQRFPLESTYMPEVLKRLSLARQIDKIVRKDSQEKAKKNWFERNAESVELVTENYDSEEERVNKHKQMKASSIKLRTLEEELNVLLSRPLQSKTFSHRYLAGAGITPLMQEQFQQLARQKQGDSESSGVNRKGKLVVIGQDCVEALQALRSAGEEVNVDLKDMAEKRRNTENLRRKRKEEKKRLRDQRRKQRRKLKHNDEDE | 802 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 70 | 102 | - | - | |
Bva05g02328 | 802 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 197 | 414 | IPR014001 | - | |
Bva05g02328 | 802 | Pfam | DEAD/DEAH box helicase | 189 | 397 | IPR011545 | GO:0003676|GO:0005524 | |
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 70 | 97 | - | - | |
Bva05g02328 | 802 | Gene3D | - | 117 | 415 | IPR027417 | - | |
Bva05g02328 | 802 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 256 | 587 | IPR027417 | - | |
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 133 | 148 | - | - | |
Bva05g02328 | 802 | SMART | helicmild6 | 491 | 572 | IPR001650 | - | |
Bva05g02328 | 802 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 451 | 612 | IPR001650 | - | |
Bva05g02328 | 802 | Coils | Coil | 225 | 245 | - | - | |
Bva05g02328 | 802 | SMART | ultradead3 | 184 | 424 | IPR014001 | - | |
Bva05g02328 | 802 | Pfam | Helicase conserved C-terminal domain | 463 | 571 | IPR001650 | - | |
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 767 | 802 | - | - | |
Bva05g02328 | 802 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 336 | 344 | IPR000629 | - | |
Bva05g02328 | 802 | Coils | Coil | 648 | 688 | - | - | |
Bva05g02328 | 802 | Gene3D | - | 443 | 685 | IPR027417 | - | |
Bva05g02328 | 802 | CDD | SF2_C_DEAD | 452 | 581 | - | - | |
Bva05g02328 | 802 | PANTHER | RNA HELICASE | 77 | 720 | - | - | |
Bva05g02328 | 802 | CDD | DEADc_DDX24 | 176 | 441 | - | - | |
Bva05g02328 | 802 | Coils | Coil | 760 | 801 | - | - | |
Bva05g02328 | 802 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 165 | 193 | IPR014014 | GO:0003724 | |
Bva05g02328 | 802 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX24 | 77 | 720 | - | - | |
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 117 | 148 | - | - | |
Bva05g02328 | 802 | MobiDBLite | consensus disorder prediction | 778 | 792 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva05g02328 | Bva-Chr5 | 17830358 | 17840748 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva05g02328 | 166 | 612 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 28.450 | 3.08e-41 | 155 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva05g02328 | K14805 | - | gmx:100806018 | 1173.69 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva05g02328 | 05 | 17830358 | 17840748 | Bva05g02328 | 05 | 17830358 | 17840748 | ECH |