Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02328 ATGGACGCCGAACCACCAGTGAGCTCTTCTAAGCCTCGGCAGGGAAAGGCCAAGAGAAAAAGAACTCAGCAAGATGCAGAACTCGAACGATTTGATTCACTAACATGGAACTCCTCTCTTCCTGAGGATGGCCTTTCTATGCTAATTGGCTCGAATGAACTCGAAGGAGGTTTTCTTTCACTTGAAGAGATTGACGAATCTCACTATAATTTGGGGATTCCTAAACATAAAGAAGGCAAGAACAAGTCTAAACGGGACACAAATTCAAAGAAACAGAAGAAGGGCCAAACTGATGGCCCTTGTAGTGACATTGTTGAAGCCAAGTTTGAAGGTGAAGTCGTGAAGGATGAGGATGTGAAGtctaaaatgaagaaaaaaaagaagaaaaagaaggaagctGGAGAAAAACAGAAAGTCGAGGCACCTGCTTCTGACATAGTTCATGACTCAAAGGACGATATTGAGGAAGGGGACGTTGATGAAACTGAATTTTATGCTTGGAACGAATTGAGGCTTCATCCTCTGTTGATGAAAGCAATATATGAGCTAGGCTTCAAAGAGCCAACACCAATACAGAGAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGGAAGACACTTGCATTTGGTTTGCCTATTCTGCAACGCCTTTTGGAGGAGCGAGAAAAGGCTACAAAGATGCATGAAGAAAGGGGTGAAGAACCAGAAAAGTACTTTCCTTCAGGCATTTTGAGGGCTCTAATTATTACTCCAACTAGGGAACTTGCAATTCAGATCACTGATCATCTGAAAGCAGTAGCCAAGCATATCAATATTAGGGTGACTCCTATAGTTGGGGGGATCTTGGCTGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCAGAGATTATTGTTGGAACTCCAGGGAGGTTATGGGAACTTATGTCTGCTGGCGAAAAGCATCTAGTTGAGTTACACtcattgtctttcttcgtgctTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGATATGTTACCCATGTCTAATGTATCTGTTGTAGATAATCCTCAAAATCCACAAAATTGTGTTACAGTTTCAAGCtaccaaagaaagaaaagacaaaccCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTCCGCAAGAAGCTAAAGCATGGTTCTACAAAACCAAAGCAAAGCATGTCTGATGGATTCAATTCTATTGAAACTCTTTCTGAACGGGCTGGAATGAGAGCCAATGCTGCAATCATTGATCTAACTAATTCATCAATATTAGCAGCTAAGCTTGAGGAGTCATTTATCGAATGCAAGGAAGAAGATAAAGATGCTTATTTGTATTACGTTTTGACCGTTCATGGGCGAGGTCGCACAATAGTATTTTGTACGTCAATTGCAGCTTTGCGCCATATCTCTTCCCTCCTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGCTtaaagTCCATTGATCGCTTtcgtgaaaatgaaaatggcatTCTTGTAGCCACTGATGTTGCAGCTAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAAGTATATGTTCATAGAAGTGGAAGAACAGCGAGAGCTTCTGCTGAAGGGTGCAGCATTGCTTTGATCTCACCAAGAGATACATCAAAATTTGCTTCGTTGTGCAAGTCATTTTCTAAGGATAATTTTCAGCGATTTCCTTTAGAGAGCACTTACATGCCAGAGGTCCTTAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAGTAAGGAAGGATTCCCAGgagaaagcaaagaaaaactgGTTTGAAAGGAATGCTGAATCTGTAGAACTAGTGACTGAGAATTATGACAGTGAAGAGGAAAGAGTGAACAAACATAAGCAAATGAAAGCAAGCTCTATAAAACTGAGGACATTGGAGGAGGAGCTCAATGTGCTGCTTTCACGTCCTTTAcaatcaaaaacattttcacaTCGTTATTTAGCAGGGGCTGGTATCACTCCTCTCATGCAGGAACAGTTCCAACAACTAGCCAGGCAAAAGCAAGGTGATTCCGAAAGTTCAGGAGTTAACAGAAAGGGGAAATTGGTTGTGATTGGTCAGGATTGTGTGGAAGCACTTCAGGCACTGCGGAGTGCCGGCGAAGAGGTGAACGTGGATCTTAAAGATATGGCAGAGAAACGCAGAAACACGGAgaatttaagaagaaagagaaaggaagagaagaaacgCTTGCGTGATCAGCGGAGAAAGCAGAGGAGAAAGCTTAAACATAATGACGAGGATGAATA 2408 0.3966 MDAEPPVSSSKPRQGKAKRKRTQQDAELERFDSLTWNSSLPEDGLSMLIGSNELEGGFLSLEEIDESHYNLGIPKHKEGKNKSKRDTNSKKQKKGQTDGPCSDIVEAKFEGEVVKDEDVKSKMKKKKKKKKEAGEKQKVEAPASDIVHDSKDDIEEGDVDETEFYAWNELRLHPLLMKAIYELGFKEPTPIQRACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKATKMHEERGEEPEKYFPSGILRALIITPTRELAIQITDHLKAVAKHINIRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNVSVVDNPQNPQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKHGSTKPKQSMSDGFNSIETLSERAGMRANAAIIDLTNSSILAAKLEESFIECKEEDKDAYLYYVLTVHGRGRTIVFCTSIAALRHISSLLRILGINVWTLHAQMQQRARLKSIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDNFQRFPLESTYMPEVLKRLSLARQIDKIVRKDSQEKAKKNWFERNAESVELVTENYDSEEERVNKHKQMKASSIKLRTLEEELNVLLSRPLQSKTFSHRYLAGAGITPLMQEQFQQLARQKQGDSESSGVNRKGKLVVIGQDCVEALQALRSAGEEVNVDLKDMAEKRRNTENLRRKRKEEKKRLRDQRRKQRRKLKHNDEDE 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02328 802 MobiDBLite consensus disorder prediction 70 102 - -
Bva05g02328 802 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 414 IPR014001 -
Bva05g02328 802 Pfam DEAD/DEAH box helicase 189 397 IPR011545 GO:0003676|GO:0005524
Bva05g02328 802 MobiDBLite consensus disorder prediction 70 97 - -
Bva05g02328 802 Gene3D - 117 415 IPR027417 -
Bva05g02328 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 587 IPR027417 -
Bva05g02328 802 MobiDBLite consensus disorder prediction 133 148 - -
Bva05g02328 802 SMART helicmild6 491 572 IPR001650 -
Bva05g02328 802 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 451 612 IPR001650 -
Bva05g02328 802 Coils Coil 225 245 - -
Bva05g02328 802 SMART ultradead3 184 424 IPR014001 -
Bva05g02328 802 Pfam Helicase conserved C-terminal domain 463 571 IPR001650 -
Bva05g02328 802 MobiDBLite consensus disorder prediction 1 30 - -
Bva05g02328 802 MobiDBLite consensus disorder prediction 767 802 - -
Bva05g02328 802 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 336 344 IPR000629 -
Bva05g02328 802 Coils Coil 648 688 - -
Bva05g02328 802 Gene3D - 443 685 IPR027417 -
Bva05g02328 802 CDD SF2_C_DEAD 452 581 - -
Bva05g02328 802 PANTHER RNA HELICASE 77 720 - -
Bva05g02328 802 CDD DEADc_DDX24 176 441 - -
Bva05g02328 802 Coils Coil 760 801 - -
Bva05g02328 802 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Bva05g02328 802 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 77 720 - -
Bva05g02328 802 MobiDBLite consensus disorder prediction 117 148 - -
Bva05g02328 802 MobiDBLite consensus disorder prediction 778 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02328 Bva-Chr5 17830358 17840748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02328 166 612 Eukaryotic Initiation Factors Gene Family AT5G11200 28.450 3.08e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02328 K14805 - gmx:100806018 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02328 05 17830358 17840748 Bva05g02328 05 17830358 17840748 ECH