Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02317 atGTATTGGGGAGTGATGGCAGCTAGCCATATGGGCTGGGGAATAATAGAGGAAGAGGGTTGGAGGAAAGGTCCTTGGACTGCTGAAGAAGACAGATTGCTCATTGAATATGTTAGGGTACATGGTGAAGGTAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAGAGGAATGGGAAGAGCTGTAGATTGAGGTGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGCTACATGCCAGATGGGGAAATAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAAAAAGTCCAAGAATCCCTCTGATGCCGCAGAAAAGGCAAAAAATCGCCTTCTGAGGAGGCAGCAATTCCAGCAGCAACAACAGCAGCAattgcagcagcagcaacagcaacagcaGCTTCAATTCAGCTTGGACATGAAGAGCATAATGGCCTTGCTTGAGGAAAATGAGCACAAAACACCCTCTTTCTCTCATGTGAGGCAAGAAGTGACCAATCTTTACCCAAACACCACCACAGAGGAGCAAGGCTACTTCTATTCTCTCCTCAGTGGCAATGCCTCTGTGCCTGAGGCCTCAAATGAAGAGATTTTATGGGATGGATTATGGAACTTAGATGATTTTCATGGGAATTTCTCTGCAGCTGCTGCAGCAAACAAAGCCAATAATCTGCATAATTTAGTTGCTCCCTTTTGTTG 782 0.4361 MYWGVMAASHMGWGIIEEEGWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKSKNPSDAAEKAKNRLLRRQQFQQQQQQQLQQQQQQQQLQFSLDMKSIMALLEENEHKTPSFSHVRQEVTNLYPNTTTEEQGYFYSLLSGNASVPEASNEEILWDGLWNLDDFHGNFSAAAAANKANNLHNLVAPFC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02317 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Bva05g02317 260 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Bva05g02317 260 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Bva05g02317 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 252 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva05g02317 260 SMART sant 22 72 IPR001005 -
Bva05g02317 260 SMART sant 75 123 IPR001005 -
Bva05g02317 260 PANTHER MYB TRANSCRIPTION FACTOR 1 252 - -
Bva05g02317 260 CDD SANT 80 121 IPR001005 -
Bva05g02317 260 Gene3D - 80 124 - -
Bva05g02317 260 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Bva05g02317 260 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Bva05g02317 260 Gene3D - 23 75 - -
Bva05g02317 260 Coils Coil 136 156 - -
Bva05g02317 260 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Bva05g02317 260 CDD SANT 25 70 IPR001005 -
Bva05g02317 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02317 Bva-Chr5 17748796 17749861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02317 18 260 MYB Transcription Factor Family AT3G24310 62.162 1.04e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g02317 Myb_DNA-binding 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02317 K09422 - gmx:100795981 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02317 05 17748796 17749861 Bva05g02317 05 17748796 17749861 ECH