Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02315 ATGGATTCTCTCTCGCATGTTCAAGACCTTAATCTGCTTCCAGAGGCGCGTGCCACGCCCAGTAGCAGTTCTGGCGTCATCGCCGCTGAGGCCACCGGTAAGGAATCGTTGACCCCAATGTTAGTGCCGAAACTGGAGCCGTTGGACGAACCGCTGGCTACTTTACCCGAAGAACCCAACGTTTCGACCCCTTCATTAAATGGGGTTTCTTACTTTCCGAATGCTGCTTTCTCTTCCGGTGACTTCACATTTCCTGAAGCCTCAGGTGTATCGCCGGAGGAAGGGGATTTGTACTCTGAATTTTGCCGAATTTCTGAGCTCTTCAGGACCGCGTTTGCCAAAAGGATGGAGGAGCAATTGGGAGGAGAAGTTACCGGTTTGGATCCGGAGACGGGAGCTATTGTTCCTGTCCCGGAGCAGACCCAGATTGCCCCGTTGGTGGTTTCCCCGAGGCCGAAGCTGCGGAAGAAGGAACTGGTGAGGGTCACGGATCTTAAAATCGAGGATCAAAGGCATTTCCGCGACGTTATAAGACGGACAAGGTTGATCTACGATTCGTTGCGAGTTTTGGCAACAGTGGAGGATGAGAAAAGAAGCGAATTGGCTAACCATAGGCGCCTGCGAGGTGACTTGTTCGCCGCTTCGATGATGAGGGATCGTGGGATGTGGCTGAATCGCGATCAGAGAATAGTGGGTTCGATTCCAGGGATTGAAGTGGGAGATTTGTTCTTCTTCAGGATGGAAATGATGGTGCTTGGTTTGCATGGTCAGCCACAAGCTGGAATTGACTATCTTCCTGCGAGCCAGAGCACAAATGGGCAGCCAATAGCCACCAGTGTTATAGTTTCTGGAGGGTACGAGGATGATGAAGATGGGGGCGAGGAGATCATTTATACAGGTCATGGAGGGCAAGATAAGCATTCGAGGCAATGTGAACACCAAAAGCTAGAAGGGGGAAACCTTGCAATGGAGAGAAGCATGACTTATGGGATTGAAGTGAGGGTTATTCGAGGGATCAAATATCAGGGAAGTCTTACTAATAAAGTTTATGTTTATGATGGCTTGTATAGAATTATTGATTGCTGGTTTGATGTGGGCAAGTCTGGTTTTGGAGTTTTCAAGTATAAGCTAATGAGAATTGAAGGGCAACCTGAAATGGGTAGTATGATTCTTAGGCGTGCTGCTGCTCTTCGGAGAAATCCGTATGCTGACAAGTTGCCTTATGTTAGTCTTGATATTTCGATCAAGAGGGAGAGTGTTGCTGTTGGTCTATTTAATGATATAGATTCTGCTTATGACcctcttcgttttgagtatcttCCCAGGACTACTTTCCCACCATTTGTGTTTAGTAAGAATGGTACTGGTTGTGAGTGTATCTCAGGCTGTACAGAAGGCTGCCTTTGTGCTATGAAAAATGGGGGTGAATTTGCTTATAACCAAAGTGGGATTCTCGTAAGAGGGAAACCTGTAATTTTTGAATGTGGTCCGTTCTGCAGTTGTCCTCCAGAATGTCGGAACCGTGTCACACAAAAGGGGTTTAAACATAAGTTGGAAGTGTTCAGGTCTAGGCTAACAGGTTGGGGAGTTAGGTCCTTGAACCTTATCCATGCTGGTTCCTTTATCTGTGAATATACAGGGGTTGTTTTGACCACTGAGCAAGCAAAAATTTTGACTATGAATGGTGATACACTGATATATCCAAATCGATTTTCTGATAGGTGGGCAGAATGGGGTGACTTATCCCAGGTATTCTCTGATTTTGTGCGTCCATCTTTTCCATCAATTCCTCCTTTAGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATGTGAGCCACAGTTCAATGCCAAATGTATTGGTTCAGTTTGTTCTGTATGATCATAATAATTTGATGTTCCCCCACATTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTACGGGGTAATTGATGATTGTACAGCGAAGCTTGCAATATGTAACTG 2018 0.4549 MDSLSHVQDLNLLPEARATPSSSSGVIAAEATGKESLTPMLVPKLEPLDEPLATLPEEPNVSTPSLNGVSYFPNAAFSSGDFTFPEASGVSPEEGDLYSEFCRISELFRTAFAKRMEEQLGGEVTGLDPETGAIVPVPEQTQIAPLVVSPRPKLRKKELVRVTDLKIEDQRHFRDVIRRTRLIYDSLRVLATVEDEKRSELANHRRLRGDLFAASMMRDRGMWLNRDQRIVGSIPGIEVGDLFFFRMEMMVLGLHGQPQAGIDYLPASQSTNGQPIATSVIVSGGYEDDEDGGEEIIYTGHGGQDKHSRQCEHQKLEGGNLAMERSMTYGIEVRVIRGIKYQGSLTNKVYVYDGLYRIIDCWFDVGKSGFGVFKYKLMRIEGQPEMGSMILRRAAALRRNPYADKLPYVSLDISIKRESVAVGLFNDIDSAYDPLRFEYLPRTTFPPFVFSKNGTGCECISGCTEGCLCAMKNGGEFAYNQSGILVRGKPVIFECGPFCSCPPECRNRVTQKGFKHKLEVFRSRLTGWGVRSLNLIHAGSFICEYTGVVLTTEQAKILTMNGDTLIYPNRFSDRWAEWGDLSQVFSDFVRPSFPSIPPLDFALDVSRMRNVACYVSHSSMPNVLVQFVLYDHNNLMFPHIMLFAMENIPPMRELSLDYGVIDDCTAKLAICN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02315 672 SUPERFAMILY PUA domain-like 214 390 IPR015947 -
Bva05g02315 672 SUPERFAMILY SET domain 403 660 IPR046341 -
Bva05g02315 672 SMART G9a_1 227 383 IPR003105 -
Bva05g02315 672 SMART preset_2 410 500 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva05g02315 672 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 38 669 - -
Bva05g02315 672 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 87 672 IPR025794 GO:0016571
Bva05g02315 672 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 38 669 - -
Bva05g02315 672 ProSiteProfiles Pre-SET domain profile. 455 513 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva05g02315 672 Pfam Pre-SET motif 414 508 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva05g02315 672 Pfam SET domain 527 659 IPR001214 GO:0005515
Bva05g02315 672 SMART set_7 516 665 IPR001214 GO:0005515
Bva05g02315 672 ProSiteProfiles YDG domain profile. 232 379 IPR003105 -
Bva05g02315 672 Gene3D - 213 393 IPR036987 -
Bva05g02315 672 ProSiteProfiles SET domain profile. 516 659 IPR001214 GO:0005515
Bva05g02315 672 Pfam SAD/SRA domain 231 383 IPR003105 -
Bva05g02315 672 Gene3D SET domain 394 672 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02315 Bva-Chr5 17720782 17723232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02315 139 660 Su(var)3-9 homologs AT5G04940 36.347 1.81e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva05g02315 SAD_SRA 5.6e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02315 K11420 - pvy:116108901 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02315 05 17720782 17723232 Bva05g02315 05 17720782 17723232 ECH