Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02285 ATGGCTGCCACTGCGGCTGCGGCCATAGcgtcttccttcttttcttccattgaCACCCTCAAATGCCTCCGTTCCAAGAACTTGTCTTTGGACCCTCTCATCAGAATCTCATCGACCCCCATGCTAGCTTCGCTTTCTCACTCAGTGGAACCTCTCTCCATTGGCGCCGTTTCTCGCAAATCGTGGTGGTTGCCCAGAATTTCTGCTGCTGTTGCACAGGAGGAGGTGGCAGTAGCTGCTGATGCCGAGGTTAAAGCTGGTTTAgctgaagagaaagaagatggtGAAGTGCATGGAGAAGGGGAAGAAGTGGTAGCTGAAGGAGAAGCTGAAGAGACTACCAATACTAAGCTTTATTTTGGGAATTTGGCTTATGGTGTTGACAGTGCTCAACTTGCAGGGCTTGTTCAGGATTATGGAAGCCCAGAACTTGTTGAGgTTCTTTACAACCGAGAAACTGGAAAGGGCAGAGGATTTGCATTTGTGACAATGAGTAGTATTGAAGATTGTAATGCAGTAATAGAAAACCTTGATGGAACGGAATTCTTGGGTCGAATCTTACGGGTGAACTTCTCTGATAAACCTAAATCAAAATTGCCCTTATACCCTGAATCTGAACATAAGCTCTTTGTTGGTAATCTGTCATGGTCAGTAACTTCTGAGAGTTTGACAAAAGCTTTTCGAAAATATGGAAATGTGGTTGGAGCTAGGGTCATATATAATGGGGAGACCGGGAATTCTCGGGGCTATGGCTTTGTTTGCTATTCAAGTAAAGAAGAAATGGAATCTGCCCTTGAAGCCATGAATGGAGTGGAACTAGAAGGAAGGGAGTTGCGAGTAAGCTTAGCGCAAGGAAAACAATCATA 866 0.4284 MAATAAAAIASSFFSSIDTLKCLRSKNLSLDPLIRISSTPMLASLSHSVEPLSIGAVSRKSWWLPRISAAVAQEEVAVAADAEVKAGLAEEKEDGEVHGEGEEVVAEGEAEETTNTKLYFGNLAYGVDSAQLAGLVQDYGSPELVEVLYNRETGKGRGFAFVTMSSIEDCNAVIENLDGTEFLGRILRVNFSDKPKSKLPLYPESEHKLFVGNLSWSVTSESLTKAFRKYGNVVGARVIYNGETGNSRGYGFVCYSSKEEMESALEAMNGVELEGRELRVSLAQGKQS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02285 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Bva05g02285 288 Gene3D - 72 196 IPR012677 -
Bva05g02285 288 Gene3D - 197 288 IPR012677 -
Bva05g02285 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 187 IPR000504 GO:0003723
Bva05g02285 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Bva05g02285 288 SUPERFAMILY RNA-binding domain, RBD 111 197 IPR035979 GO:0003676
Bva05g02285 288 SUPERFAMILY RNA-binding domain, RBD 200 287 IPR035979 GO:0003676
Bva05g02285 288 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 88 287 - -
Bva05g02285 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Bva05g02285 288 SMART rrm1_1 117 190 IPR000504 GO:0003723
Bva05g02285 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Bva05g02285 288 PANTHER TRANSFORMER-2-RELATED 88 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02285 Bva-Chr5 17450553 17453286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02285 110 287 Eukaryotic Initiation Factors Gene Family AT4G34110 29.534 3.20e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02285 - - jre:108990562 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02285 05 17450553 17453286 Bva05g02285 05 17450553 17453286 ECH