Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02275 ATGTTGCAGGATGTTATCCACCCTCCACCGCCATCGCAGCCGCCGCTCCCACCGGCTGAGCAACTCCCCATTGATGAAATTTCAAGCCCAATCAGTGCTCGAATTCTCGAACTTTGTGACTCTGAACTTTTCTCAGAGACCCTGCAGAATTCTGAAGTTACCTCCAGCTCAAACTGTTGCTATGATGAGAACTCCTCCTATGCCACAAATATATCCCTAGCTTTAGGTGTAGACAATAAGTTCATTAGCAAAAATAATACCCCAACTAGCACTACAGCAACCAGCACCACCACCGCCACCACCACAAACAACAATACAACCAACAGTAGTAATCTGTCCATCATCTTTGATTCCCAAGAAGAAATTGACAATGACATTTCTGCCTCCATAGACTTCTCATCAtctccttctttttctgttcCTTCATTTCTCCCAGTCACAACACAACAGGAACAGTTTGATTTCTCCTCAGTGCAGCCTCAGGTAACACTAGCAGCAACTTCAGTTGTGGAGGGCCTCTCTCAATATCCCGCTGATTCTGTTGCTCCCCTGGTGGGAGCTCCATTACCATCAGTGTTTGAAGAGGATTGCTTATCTTCGGTCCCTTCTTATGTGCCTTTGAACCCTTCATCTCCTTCTTGTTCTTATCTCGGTCCTGGCGCAGGACCTTACATGCCTCCTGGGTCTATTAATCCTTCCTTATCTGCTGACTGCTCTGGGATATTTGGATGGGGCGTTCTCATGGGTTCTGAACTGCAAACACAAGAACTGGAATACCAGGGAGATAATGGAGGAATCTTTTGTCCGGATTCGATTCCTCGAGTGTTCAACCCTCCTCCAGATCTTCAGCCACTTAACACTGAGAATAATCTGCAACTGGTAGCTGGAGCTGGGAGTTCCACCACTTTGACACCAGAAATCTCAAACCTGGAGGATTCTACCTTCAAGGCTGGAAAACTTTCTGTTgagcaaaggaaagaaaagattcaTAGATACATGAAGAAAAGGAATGAGAGGAACTTCAGCAAGAAAATCAAGTATGCCTGCAGAAAAACCCTGGCAGATAGCCGACCTCGCGTCAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAGACTCATAGACCAGCTAGTAGCAAtcatgaagaagatgatgaggaAGAGGTAGTTgtgaaagaagaagatatggTTGATTCCTCAGATATTTTTGCCCATATCAGTGGGGTGAATTCCCTCAAATGCAACTATTCAATCCAGTCCTGGATTTG 1268 0.429 MLQDVIHPPPPSQPPLPPAEQLPIDEISSPISARILELCDSELFSETLQNSEVTSSSNCCYDENSSYATNISLALGVDNKFISKNNTPTSTTATSTTTATTTNNNTTNSSNLSIIFDSQEEIDNDISASIDFSSSPSFSVPSFLPVTTQQEQFDFSSVQPQVTLAATSVVEGLSQYPADSVAPLVGAPLPSVFEEDCLSSVPSYVPLNPSSPSCSYLGPGAGPYMPPGSINPSLSADCSGIFGWGVLMGSELQTQELEYQGDNGGIFCPDSIPRVFNPPPDLQPLNTENNLQLVAGAGSSTTLTPEISNLEDSTFKAGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETHRPASSNHEEDDEEEVVVKEEDMVDSSDIFAHISGVNSLKCNYSIQSWI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02275 422 MobiDBLite consensus disorder prediction 364 389 - -
Bva05g02275 422 ProSiteProfiles CCT domain profile. 325 367 IPR010402 GO:0005515
Bva05g02275 422 MobiDBLite consensus disorder prediction 7 21 - -
Bva05g02275 422 MobiDBLite consensus disorder prediction 364 382 - -
Bva05g02275 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 422 - -
Bva05g02275 422 MobiDBLite consensus disorder prediction 86 106 - -
Bva05g02275 422 MobiDBLite consensus disorder prediction 1 23 - -
Bva05g02275 422 Pfam CCT motif 325 367 IPR010402 GO:0005515
Bva05g02275 422 PANTHER CCT MOTIF FAMILY PROTEIN 24 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02275 Bva-Chr5 17374173 17378345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02275 325 383 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 1.19e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva05g02275 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02275 - - aprc:113871720 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02275 05 17374173 17378345 Bva05g02275 05 17374173 17378345 ECH