Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02273 ATGGATCAGATTTTGCTTTCTGGTCATCTCAGCTTGGTAAATGCCGACATCTTCGTGAAAATGTGGCTACTGGAAAATTTGACATGTAATCTACCTTACCTCACTCGGCGTGCTTACGGTTGTTGTGTCCAATATCAGCAACCTTTTGAATCAAAGTTCAAGAGAGAGCAAAGGGGCAGCCATCAGAGTTTGCTGGAAATGACAcaaacacaaagaaaaaagattgcaGCTGCTTGCAAGTACATGAAGCAACTTGGCTTCTCCAGAGAACAAGTGAACCCAAAACTAAAGGAACTTTTAGTGTTGTATTTGAATCAGTGGACGTTTATTGAAGAAGAGAACTATAAAGTTCTGGTAGATGCCTTACTGTTGGACAATGATCAACATGATAAGAGGATAGAGtctgataaaaaagaaactggATCAACCTCCAAAAACAAGGAAGTTAAATGTAAGGAAGAAGCTCCTTTACATTGTGAATCTTCTGCCTCTACAGTTAGAAGGAGGGGATTGAGGCCTAGGGATCTGAATGGACTGGTTGTCACGTCCAAGTTACCCTCAATGGAAACAGTATTGGTTTTGGGGAGAGAAGAGAATGTGTTGTCTTCAAACTCGTCAGATGAAGAAAGCATTCCTCTCATCAAAAGGAAATCTGTAAGAAATCAGATGGAGAAGGATGAGTCTGATGATGAAGATAAATTATCTACAAGTGAACACTGTGAGCCTCTGACAAAAAGAGTGCGTCATACATACCCTGACAACTCAAAACCACCGTTTGTCAAAAAGTCATTAGTAAGTGCAAGAGAAGATGAGATTAAATTGCCTCAAACTTTTTGCTTAGAGGAGACCCCTGAGCCAGCTCTATACATAAAATCACCATATGAACAAAACGAGGCAAAGTTTGATTCACCCCAGCAATCTCATCCTCATCCACCTCTAATTGATTCAAGTCATATGAGAGCTGAGTTATCTGAAGAAGGTGCTAGTAGCAGCAAGAAATCAGTGACATCTGAATATACTTTCTTCAGGGAAAGTATCAACTCTGACAGAGCAGATGATGTGTTGTATCTAGTGAAACAAAAACTTGAGTCCTGCACTGACCTGATCTTGGCAGAGAATGTTGCTGATATGTATCAGAACAATATAGAATTTAACTGTGGTGAGCTGTTCTATAATGAGCCACAACTGAATGAAGTTCTTCTACCTTTGATGTATCCAGATACTTCAAATGGGCACAATTCTGATGTGGAAGATGAAATGAAGTTTTTGGAGTATGATCATCTAAATGTAGATGACGATGTTGACAGTATCTCAAAAATGACACAGTTTGATATTGCTTCTAGTTCCAAAGGGGAGGTAAAAGTTTCTCTGATCTGCAATCCCTCCAAAACTCATTTTGTTATCCCTAGTTTGGAGTCTGTTGTAAAAGTTGTGGAAGAGAAATACGAACGATTCAAGATTATAGATCCAGATTTCTCTGTGATGAAGTTCATGGAAAATGTCTGTGAATGTTTCATGGCAATGGCTACCCAATCTTCTGCTGACAAACATTTGAATAGTTTTCCCCAGACAAAGAAATCTGATTCCCAAGAAACTCCAGGCAAAATTTATTGTCCAAACAACTTAGACAACCATCAAAGCAATTCAAATTGTTCTGCCAAGATTCAGGATCTTATCAAGATAGCACCATCGGTTCCAAAGGCTGTAGCTCTTAGTGATCTAGAAGGTCTACATTGCATTAGTGGTTTCAAGATACCAGATATCATTGACATTCCCTGTCTCAGGAAAAGAAGGATGCATATTCTAAAGGACACAAAAATCAAACACTCATGTGGTGTGGCTGGAACCCAAAAGCACCATATCTCCTTCACTGAAGTGAAGTACCAAGATGATGTGATTCACATTGAAGACATAACTAGAGGTGAAGAAACGATGAAAGTTTCCTTGGTACACAGTGGATCTTCTGAAGATTTGCCAACCTTCATGTACATTCAAAAAAGTATTGTATACGATAAGGCCTATGTCAATTTTACACTTGCTCGTATATCTGATGAAGAATGTTGTTCACATTGTTTTGGTGATTGTCTTGCATCTCCTATACCTTGTGAGTGTGCTCGGGAAACTGGGGGTGAGTTTTCTTACACATACGAGGGATTGCTTAAGGAGAAGTTTCTTGAGGAATGTATCTCCCTGAATCAGGATCCAAAAGCACacaatttctttcattgtAAGGAGAGATGCCCACTAGAGATATCCAACAACAAACATGAAATCAACTGCTGCAAGGGACATCTagtgaaaaaatttattaaggaaTGCTGGTCAAAATGTGGATGCAACAAAAACTGTGGCAACCGTGTTGTTCAGCGAGGCCTTACTGTGAATCTACAGGTGTTTCAAACACCAGAAGGGAAAGGGTGGGGTCTCAGAACCCTTGAAAATTTACCCAGAGGTGCCTTTGTATTTGAGCATGTTGGGGAAATTGTAACCAACACAGAACTATTTGCGCGAATGGTGCAAACCAGAGGTAATGATAAACATACATATCCTGTACTGCTTGATGCAGACTGGGGTTCAGAAAAAGTTTTAACTGATGAAGTGGCCCTGTGCTTGGATGCAACTTTTTATGGGAATGTTGCTAGATTTCTCAATCACAGGTGTGGCGATGCAACCTTAATTGATATCCCAGTTGAAATTGAGACACCAGATCACCACTACCATCATGTTGCTTTCTTCACAACAAGGGAAGTAGCTGCCATGGAAGAGCTTACCTGGGATTATGGCATTAACTTCAATGACCAAGAGGACCCTGTAAAAGCATTCAGATGCCTCTGTGGCAGTTCATTGTGCCGTGACCCAAGGCAACCGAAGAGGAAGCTCAAGATGCTGTCTTGTCCTATGGCGTTGTG 2909 0.3953 MDQILLSGHLSLVNADIFVKMWLLENLTCNLPYLTRRAYGCCVQYQQPFESKFKREQRGSHQSLLEMTQTQRKKIAAACKYMKQLGFSREQVNPKLKELLVLYLNQWTFIEEENYKVLVDALLLDNDQHDKRIESDKKETGSTSKNKEVKCKEEAPLHCESSASTVRRRGLRPRDLNGLVVTSKLPSMETVLVLGREENVLSSNSSDEESIPLIKRKSVRNQMEKDESDDEDKLSTSEHCEPLTKRVRHTYPDNSKPPFVKKSLVSAREDEIKLPQTFCLEETPEPALYIKSPYEQNEAKFDSPQQSHPHPPLIDSSHMRAELSEEGASSSKKSVTSEYTFFRESINSDRADDVLYLVKQKLESCTDLILAENVADMYQNNIEFNCGELFYNEPQLNEVLLPLMYPDTSNGHNSDVEDEMKFLEYDHLNVDDDVDSISKMTQFDIASSSKGEVKVSLICNPSKTHFVIPSLESVVKVVEEKYERFKIIDPDFSVMKFMENVCECFMAMATQSSADKHLNSFPQTKKSDSQETPGKIYCPNNLDNHQSNSNCSAKIQDLIKIAPSVPKAVALSDLEGLHCISGFKIPDIIDIPCLRKRRMHILKDTKIKHSCGVAGTQKHHISFTEVKYQDDVIHIEDITRGEETMKVSLVHSGSSEDLPTFMYIQKSIVYDKAYVNFTLARISDEECCSHCFGDCLASPIPCECARETGGEFSYTYEGLLKEKFLEECISLNQDPKAHNFFHCKERCPLEISNNKHEINCCKGHLVKKFIKECWSKCGCNKNCGNRVVQRGLTVNLQVFQTPEGKGWGLRTLENLPRGAFVFEHVGEIVTNTELFARMVQTRGNDKHTYPVLLDADWGSEKVLTDEVALCLDATFYGNVARFLNHRCGDATLIDIPVEIETPDHHYHHVAFFTTREVAAMEELTWDYGINFNDQEDPVKAFRCLCGSSLCRDPRQPKRKLKMLSCPMAL 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02273 969 MobiDBLite consensus disorder prediction 134 156 - -
Bva05g02273 969 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2 ISOFORM X1-RELATED 74 953 - -
Bva05g02273 969 SMART preset_2 635 778 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva05g02273 969 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 46 968 IPR025776 -
Bva05g02273 969 CDD SET_SETDB-like 659 928 - -
Bva05g02273 969 Pfam Ubiquitin-binding WIYLD domain 71 127 IPR018848 GO:0018024
Bva05g02273 969 ProSiteProfiles Pre-SET domain profile. 694 791 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva05g02273 969 Gene3D SET domain 638 952 IPR046341 -
Bva05g02273 969 Pfam Pre-SET motif 638 786 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva05g02273 969 SMART set_7 794 934 IPR001214 GO:0005515
Bva05g02273 969 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 74 953 - -
Bva05g02273 969 ProSiteProfiles SET domain profile. 794 928 IPR001214 GO:0005515
Bva05g02273 969 Pfam SET domain 806 928 IPR001214 GO:0005515
Bva05g02273 969 MobiDBLite consensus disorder prediction 201 255 - -
Bva05g02273 969 SUPERFAMILY SET domain 655 951 IPR046341 -
Bva05g02273 969 MobiDBLite consensus disorder prediction 210 252 - -
Bva05g02273 969 Gene3D - 63 128 IPR043017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02273 Bva-Chr5 17352720 17361021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02273 635 951 Su(var)3-9 homologs AT5G04940 27.893 2.95e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva05g02273 Pre-SET 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02273 - - qsu:111999549 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02273 05 17352720 17361021 Bva05g02273 05 17352720 17361021 ECH