Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02263 ATGGATTCGGATCAAGGTAAGCTTTTTATTGGTGGGATTTCGTGGGATACATCAGAGGATAAGCTGACGGAGCATTTCAGCAACTATGGTGATGTCTTACACACCTCTGTTATGAGGGAGAAGAACACTGGGAAGCCCAGAGGTTTTGGGTTCGTGGTGTTTGCAGATCCTTCGATTCTCGATAGGGTTCTAGAGGAAAAGCACGTAATTGACGGAAGAACGGTAGATGCCAAGAGGGCCTTTTCGAGGGAGGACCAACAAATTTCTGCCACTTCCAGAGCCGGAAATCCTAATTCTGCCAGGAATGCTGGAAATGGTGGAAATGTAAGgaccaagaaaatatttgttggAGGATTGCCTGCTACCTTGACTGAGGAACAATTCCGTCAGTATTTTGAAGCTTATGGCCATGTAACTGATGTAGTAGTCATGTTTGACCAGAATACAGGACGGCCACGAGGATTTGGGTTTATTTCCTTTGACACTGAAGAGGCAGTTGACAGGGTTTTGCATAAGTCATTTCATGATTTAAATGGTAAGCAAGTAGAAGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTACAATGGGTGGAGGTGGTGGTGCTGGACTTGGTGGCTATCAGGGGTATGGGGTGTCTGGTGGCAACCAAAATGCTTATGATGGTCGGATGGATTCTAGTAGGTATATGCAGTCTCAAAGCGCTGGGGGTGGTTTTCCACCTTATGGTTCTTCTGGTTATAGTGCTTCGGGATATGGGTATGGTCCTGCTAATAATGGCATGGGTTATGGTGGATATGGAAGTTATGGTGGTGCCAGTGCAGGGTATGGTGGACATGCTGGTGCAACCTATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGGTGCTCCACCAGGCGCTCCAAGGAGTTCGTGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGTTATGGAAATGCTGCTCCTTGGGGCGCTCCAGGTGGTGGTGCTGGCTCTGGTGCTGGTGGCCCTGGTTCTGCTCCTGCAGGTCAATCTCCAAGTGGAGCTGCTGGATATGGAAATCAAGGATATGGATATGGTGGGTATGGTGGATACGGTGGAAATGACAGTTCTTATGGGAACCCAGGTGTATATGGTGCTGTAGGTGGGCGACCTGGGAGTGCCCATAATAGTAATGCTAGTGGTTCAGGTGGGAGTGATCTACAGGGGACTGGTGGCAGCTATATGGGAAGTGGCTATGGTGATGCAAATGGAAACTCAGGATATGGAAATGCAGCATGGAGATCTGAACAAACACAGACATCTGGAAATTATGGCACACCTCAGGGAAATGGTTCACATGGTGGGCAAGTTGGTTATGGTGGCGGCTATGGTGGTAGTCAGGCCCGGCAAGCCCAACAACAGTG 1427 0.4856 MDSDQGKLFIGGISWDTSEDKLTEHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKRAFSREDQQISATSRAGNPNSARNAGNGGNVRTKKIFVGGLPATLTEEQFRQYFEAYGHVTDVVVMFDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRTMGGGGGAGLGGYQGYGVSGGNQNAYDGRMDSSRYMQSQSAGGGFPPYGSSGYSASGYGYGPANNGMGYGGYGSYGGASAGYGGHAGATYGNPNVPNAAYAGAPPGAPRSSWPAQAPSGYGSMGYGNAAPWGAPGGGAGSGAGGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGNDSSYGNPGVYGAVGGRPGSAHNSNASGSGGSDLQGTGGSYMGSGYGDANGNSGYGNAAWRSEQTQTSGNYGTPQGNGSHGGQVGYGGGYGGSQARQAQQQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02263 475 MobiDBLite consensus disorder prediction 384 475 - -
Bva05g02263 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Bva05g02263 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Bva05g02263 475 MobiDBLite consensus disorder prediction 335 354 - -
Bva05g02263 475 MobiDBLite consensus disorder prediction 394 413 - -
Bva05g02263 475 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Bva05g02263 475 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Bva05g02263 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 473 - -
Bva05g02263 475 Gene3D - 86 208 IPR012677 -
Bva05g02263 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva05g02263 475 SMART rrm1_1 113 185 IPR000504 GO:0003723
Bva05g02263 475 MobiDBLite consensus disorder prediction 84 106 - -
Bva05g02263 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva05g02263 475 MobiDBLite consensus disorder prediction 81 107 - -
Bva05g02263 475 MobiDBLite consensus disorder prediction 420 454 - -
Bva05g02263 475 Gene3D - 4 85 IPR012677 -
Bva05g02263 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Bva05g02263 475 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02263 Bva-Chr5 17314502 17317978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02263 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 22.388 1.49e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02263 K14411 - gmx:100811267 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02263 05 17314502 17317978 Bva05g02263 05 17314502 17317978 ECH