Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02227 ATGGAAACTGAAGGCTTGCCGCAGAGCCCAATAAATCAagctgaagatgaagaagagGTAAACGTGAACGTGTCTTTGACTACCATAGTAGCAACACCAATTAGACTGAAGAAATCTCTCACAGTCAGAGATCTCAAAGATCAACTATGTCGGAACTTTGGGGTTTCTGAAATAGATCAGCACCTATACTTCGGTGGCCAAAGACTAATGGACACAGATACACTTGTTGATTGTGGAATTGACAAGAACTCAACCATTGATCTGAATGTTCTTCAGTACGacgagaaattaaaaataagtatcaaAGAGCTCACCCTTGACGAAACCATTCATATTGTGGAAGCAAAATTGAATGACACAGTTAAAAACATCAAGAAAATGATTGCAGATTCTAAAGGGTATGAGTATGAGAGGTTGACTCTCATGTTTGAGGGGAAATTGCTGAAAGATGACAGCACCTTGGAGTCTCTCCAAGTGGAAGATGACTCAACTTTTGATCTGGTGTTGTGTGCAAAACAAGAGATTTCTATTAACGTGAAAGAACCTAAAGGAGATATTTTCCAGCTCGACGTTAAGACTTGCTTCTCTGTTCTTCATGTCAAAGCACTGGTGGGGCGAAAAACGGGGAAGCCATTGATTGATTGGCATCTACTATTCCATAGGAATCTGTTGAAGGAATGCAGGACCTTAGCTTACTATGCAATAGTGAATGGATCTATTTTGAACATTTACTATAGAAAAATTCCAATACTTGTCAAGACATGGACTGGGGAATCGATTGTTCTAAGCGTGGAGCAGGATCAGAGGGTTTCcgatttgaaattgaaagttaTCCAGAAGATGAGGATGAGGAAGATGCCGAGACCTTCTCGTATAACAAAGCTTGAATATGAAGGGAAGGAGCTTGAAGATGGTGAGAAATTGTCCAGTTACAACATCAAGCAGGACTCCACAATCGTTGAACATTG 968 0.3833 MDTDTLVDCGIDKNSTIDLNVLQYDEKLKISIKELTLDETIHIVEAKLNDTVKNIKKMIADSKGYEYERLTLMFEGKLLKDDSTLESLQVEDDSTFDLVLCAKQEISINVKEPKGDIFQLDVKTCFSVLHVKALVGRKTGKPLIDWHLLFHRNLLKECRTLAYYAIVNGSILNIYYRKIPILVKTWTGESIVLSVEQDQRVSDLKLKVIQKMRMRKMPRPSRITKLEYEGKELEDGEKLSSYNIKQDSTIVEH 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02227 253 Gene3D - 179 252 - -
Bva05g02227 253 CDD Ubl_ubiquitin_like 36 99 - -
Bva05g02227 253 ProSiteProfiles Ubiquitin domain profile. 28 100 IPR000626 GO:0005515
Bva05g02227 253 SMART ubq_7 179 253 IPR000626 GO:0005515
Bva05g02227 253 SMART ubq_7 30 101 IPR000626 GO:0005515
Bva05g02227 253 SMART ubq_7 106 177 IPR000626 GO:0005515
Bva05g02227 253 Gene3D - 22 104 - -
Bva05g02227 253 PANTHER - 2 214 - -
Bva05g02227 253 CDD Ubl_ubiquitin_like 108 172 - -
Bva05g02227 253 CDD Ubl_ubiquitin_like 181 251 - -
Bva05g02227 253 PRINTS Ubiquitin signature 40 60 IPR019956 -
Bva05g02227 253 PRINTS Ubiquitin signature 61 81 IPR019956 -
Bva05g02227 253 PRINTS Ubiquitin signature 82 103 IPR019956 -
Bva05g02227 253 ProSiteProfiles Ubiquitin domain profile. 106 178 IPR000626 GO:0005515
Bva05g02227 253 SUPERFAMILY Ubiquitin-like 4 100 IPR029071 -
Bva05g02227 253 PANTHER UBIQUITIN 2 214 - -
Bva05g02227 253 SUPERFAMILY Ubiquitin-like 99 178 IPR029071 -
Bva05g02227 253 ProSiteProfiles Ubiquitin domain profile. 179 253 IPR000626 GO:0005515
Bva05g02227 253 SUPERFAMILY Ubiquitin-like 177 250 IPR029071 -
Bva05g02227 253 Gene3D - 105 177 - -
Bva05g02227 253 Pfam Ubiquitin family 37 100 IPR000626 GO:0005515
Bva05g02227 253 Pfam Ubiquitin family 181 251 IPR000626 GO:0005515
Bva05g02227 253 Pfam Ubiquitin family 108 177 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02227 Bva-Chr5 16987839 16988600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02227 181 250 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.571 6.06e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02227 K08770 - qlo:115993865 164.081