Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02226 ATGGAAGTTCAAGTCCTGCCACTAGAAGCTGCTAAAGAAGATGAGATAAATATATACGTGAGGGTGATGAAAACAACCCAAACTAGAGCCAAAAAATCACAAACGGTCTCAAATCTCAAAGAGATTATAAGAAATCAGTGTGGAATTACTGAACATTATAAGCATCTGTTCTTCTCCGGCGAAAAACTCCGGGAGACTCAAACACTTGATCAGTGTGGAATCAAGAATGATTCAACCATTGACATGGTGATTGATAGCGATGAAAGAATGAAGATCTATGTTAAGTATCTCTCGATGccaagaacaatttttttggaaCCAAAAATAACCGACACAATCAAGAAGATCAAGACCATGGTCCAAACCCTAGAGAAATTGGAGCCAGATATGTGCTGCCTCATCTACAAAGGGAAAATGCTGAAAGATGAGAGCAGTTTAACCTCTCTCCAAGTGCCAAGCGGTTCAACATTATACCTTGTGCCAACTCCGAAGGAAGATATCACACTTTTtgtgaaagaacaaaatggagaCACCACAAAACTGGAAGTCAAAGCAACATTCACGGTTCAAGATGTGAAAGCAGTGATTGGAAGcatgaaagaaatagaagagagTGAGTGGCGGCTGGCATTCGCCGGAAACCAGCTCGAGGAACACCGGAGCTTGGCCTACTATGGGATCATGGAAGGATCAGTCCTGGACATCTACCCTAGAAAATTTCAGGTATTTGTTAGGACTTGGAATGGGAAAACTATCACTCTTCATGTTGATCAAGATCAGGATGTGCTCGTTTTGAAGTTGGATTTTGTCCAAAAGATGAAGAGGCTGATGAAGGTGCCTAGGTACACTCGTCCTGTGAAGCTTGTCTATGGAGGAAAAGAGCTTGAAAATGGTGAGAAGCTCTCAAGCTACAACATCCAAAGGGACTCCACAATTCGTGaacattg 947 0.3949 MEVQVLPLEAAKEDEINIYVRVMKTTQTRAKKSQTVSNLKEIIRNQCGITEHYKHLFFSGEKLRETQTLDQCGIKNDSTIDMVIDSDERMKIYVKYLSMPRTIFLEPKITDTIKKIKTMVQTLEKLEPDMCCLIYKGKMLKDESSLTSLQVPSGSTLYLVPTPKEDITLFVKEQNGDTTKLEVKATFTVQDVKAVIGSMKEIEESEWRLAFAGNQLEEHRSLAYYGIMEGSVLDIYPRKFQVFVRTWNGKTITLHVDQDQDVLVLKLDFVQKMKRLMKVPRYTRPVKLVYGGKELENGEKLSSYNIQRDSTIREH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02226 315 Gene3D - 86 166 - -
Bva05g02226 315 SUPERFAMILY Ubiquitin-like 237 312 IPR029071 -
Bva05g02226 315 SUPERFAMILY Ubiquitin-like 164 238 IPR029071 -
Bva05g02226 315 Pfam Ubiquitin family 242 312 IPR000626 GO:0005515
Bva05g02226 315 Pfam Ubiquitin family 101 160 IPR000626 GO:0005515
Bva05g02226 315 Pfam Ubiquitin family 169 234 IPR000626 GO:0005515
Bva05g02226 315 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Bva05g02226 315 ProSiteProfiles Ubiquitin domain profile. 16 84 IPR000626 GO:0005515
Bva05g02226 315 ProSiteProfiles Ubiquitin domain profile. 167 239 IPR000626 GO:0005515
Bva05g02226 315 Gene3D - 16 85 - -
Bva05g02226 315 SUPERFAMILY Ubiquitin-like 85 161 IPR029071 -
Bva05g02226 315 Gene3D - 237 314 - -
Bva05g02226 315 PANTHER UBIQUITIN 11 273 - -
Bva05g02226 315 Gene3D - 167 236 - -
Bva05g02226 315 PANTHER - 11 273 - -
Bva05g02226 315 SUPERFAMILY Ubiquitin-like 9 84 IPR029071 -
Bva05g02226 315 CDD Ubl_ubiquitin_like 242 312 - -
Bva05g02226 315 ProSiteProfiles Ubiquitin domain profile. 240 315 IPR000626 GO:0005515
Bva05g02226 315 CDD Ubl_ubiquitin_like 16 83 - -
Bva05g02226 315 SMART ubq_7 16 85 IPR000626 GO:0005515
Bva05g02226 315 SMART ubq_7 92 162 IPR000626 GO:0005515
Bva05g02226 315 SMART ubq_7 167 238 IPR000626 GO:0005515
Bva05g02226 315 SMART ubq_7 240 313 IPR000626 GO:0005515
Bva05g02226 315 CDD Ubl_ubiquitin_like 92 160 - -
Bva05g02226 315 ProSiteProfiles Ubiquitin domain profile. 90 160 IPR000626 GO:0005515
Bva05g02226 315 PRINTS Ubiquitin signature 143 164 IPR019956 -
Bva05g02226 315 PRINTS Ubiquitin signature 101 121 IPR019956 -
Bva05g02226 315 PRINTS Ubiquitin signature 122 142 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02226 Bva-Chr5 16981502 16984604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02226 240 312 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 1.92e-07 47.8