Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02209 ATGCCAATGCTTGACAGCCTTGGCAATTCTCAAAAGATTCTTCATGACATGATAGCTGATGAAACAAGGTTTTGGTATGAAGTTGAGTGGATGACCAAAGTGAAGGTGGCGATGGTTGCTCTAACTTATGATGGTTTTATTTCTAGCTCTCCACAGAAAGTTTTTCTCAAGAAAGCATTggtcttttcctttctccccTTGGTTCTGGGAGCACccagatttgaatttttctccaatttgtcTCCTTTCGTTTCTAGGAATTTTCCAGGGACGCCTGGCACTCTGACTGGGTTTGCTCTAAGGATTTCACAGTGTGTTTTCGCTGTTGGGTCAATTGCTGCTATGGCTACTACAcctaatttcttcaacttcacAGCTTTTTGTTACTTGATAGCTTCAATGGGTTTACAAGTCATCTGGAGTTTTGTGCTTTCTTTGTTGGATGCTTATGCTTTGTTGAGAAAGAAGACCATTCACAACCTTGTACTTGTTAGCCTCTTTGTAGTTGGAGATTGGGTAACAGCAACATTATCTCTAGCAGCAGCCTCTGCCTCAGCTGGCATTGCAGTTCTGTACTTCAATGATCTGGGACACTGCAAATTTGGAGAGACTTGCCAAAAGTACCAGATTTCAGTGGCTTTAGCCTACATGAGCTGgataaacattttaatatcATCTCTAATTATGCTTTGGCTATTGGCTGCTGGCTA 710 0.3746 MKNFPGTPGTLTGFALRISQCVFAVGSIAAMATTPNFFNFTAFCYLIASMGLQVIWSFVLSLLDAYALLRKKTIHNLVLVSLFVVGDWVTATLSLAAASASAGIAVLYFNDLGHCKFGETCQKYQISVALAYMSWINILISSLIMLWLLAAG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02209 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
Bva05g02209 152 Pfam Casparian strip membrane protein domain 8 136 IPR006702 -
Bva05g02209 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02209 Bva-Chr5 16836287 16839579 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g02209 DUF588 5e-24 CL0396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02209 - - zju:107422892 238.424