Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02206 ATGGATCTTGTAGCCAAGAGATATTTGATCCATGTCTCCTCACATGGGTCAGAAGCTCTCTCTCCCATTACAAATCCAGAAAGCTCAATCTTCCTTCCTCATCtgcattcttcttcttctaccaGTTTTCCCATTATAGTCATTGCAGTAATTGGCATAATTGCCACAGCTTTCTTGCTTGTGAGTTATTACATCTTTGTGATCAAATGCTGTCTCAATTGGCACCGCATTGACCTTCTACGGCGGTTTTCACCGTCATTCCGCCGGGAAGAACCACCGGTGATCTACACCCCGGAGTTCCGGGGACTCGACGAGGCTGTCATCAGATTAATTCCGGTGATTCAATACAAGACACAGGAAAAAAACAGAGACATCTGCGAGTGTTCTGTTTGCTTGAATGAGTTTCAAGAGGATGAGAAGCTGAGAAAGATACCAAATTGTGGCCATTTTTTCCACATTGATTGCATAGATGTTTGGCTCCTAAACAATGCCAATTGCCCACTTTGCAGAACAAGCATTTCCTTCACAAACAGGTTCCAAATTGATCAGATTCTCAATCCAAGGCCTTCAACCCAAGATAGGGGAAACCCATATAGGGAAAATCTCAGTGGCGGGAATGAAGATTTTGTGGTGATTGAACTGGGTAATGAACAAAACTTGCAAGAGAGAGCAATAACATTGGAGTTACCAACAACAACAAGGCCTCCAATTAGCCCATCACCAAGGAAATTGGAACAGAAGAAAGCAATAAAGTTGCAGAAAGTGACAAGCATGGGTGATGAGTGTATTGACATTAGAGCAAAAGATGAACAATTTTCAGTTCAACCCATTAGGAGATCTTTCTCTATGGATTCCTCAGGAGACAGACAACTCTATTTGGCAGTTCAAGAGGCTTTgcagcaacagcagcagcagctgAACAGGCAAGTCAATGAGATGGGCTCCATTGAAGGGTCTAGTGGTAGAGTTAAAAGatcattcttttcatttggGCATGGTGGTAGGTCTAGAAGTGCAGTTTCACCTGTTTATTTGGACCCATA 1043 0.4036 MDLVAKRYLIHVSSHGSEALSPITNPESSIFLPHLHSSSSTSFPIIVIAVIGIIATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSFRREEPPVIYTPEFRGLDEAVIRLIPVIQYKTQEKNRDICECSVCLNEFQEDEKLRKIPNCGHFFHIDCIDVWLLNNANCPLCRTSISFTNRFQIDQILNPRPSTQDRGNPYRENLSGGNEDFVVIELGNEQNLQERAITLELPTTTRPPISPSPRKLEQKKAIKLQKVTSMGDECIDIRAKDEQFSVQPIRRSFSMDSSGDRQLYLAVQEALQQQQQQLNRQVNEMGSIEGSSGRVKRSFFSFGHGGRSRSAVSPVYLDP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02206 347 SMART ring_2 128 169 IPR001841 -
Bva05g02206 347 SUPERFAMILY RING/U-box 127 176 - -
Bva05g02206 347 Pfam Ring finger domain 127 170 IPR001841 -
Bva05g02206 347 PANTHER RING-H2 FINGER PROTEIN ATL16 25 346 IPR044600 GO:0016567|GO:0016740
Bva05g02206 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Bva05g02206 347 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Bva05g02206 347 PANTHER RING-H2 FINGER PROTEIN ATL16 25 346 - -
Bva05g02206 347 Coils Coil 292 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02206 Bva-Chr5 16815736 16817233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02206 37 347 C3H Transcription Factor Family AT1G04360 51.437 1.34e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02206 - - gmx:100775286 462.611