Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02204 ATgatcaatattaaaaaaCCATCTAGCCAATCAAAAAACCATATCCTACAACTACAAACCTGCCAATTcagaaagcaaacaaaaaggGTCTGTAGGTCAAAAACAGAAACCAAGCATGGAGGAGAGGCAGCGAGGGAAGCAGGAGAAGGCCCCAGAAGAGGTCCGGTATCGTGGAGTCCGGAGGCGGCCGTGGGGGAAGTACGCGGCGGAGATACGGGACCCGACGAGGCAGGGGCAAGGCAGTGGCTGGGGACGTTCGATACGGCTGAGGATGCAGCTAGAGCTTATGATCGAGCTGCGTTTAACTTCAGGGGTCATCTTGCAATTCTCAACTTTCCTAATGAGTACTATCCTCAACTTAGGGGCACTCTGCCCTATCCTTAtttatcatcatcttcttcttcgtcttcttTCCAAAGTGGAAGCTCAAGCTCGTCTTCAGGATCACAATATAGGCAAGTTTTCGAGTTCGAGTGTTTGGATAATAAGGTGTTGGAAGACATGCTTGAggctgaagaagaaaagaggagaagGATGGGAAATTG 545 0.4257 MINIKKPSSQSKNHILQLQTCQFRKQTKRVCRSKTETKHGGEAAREAGEGPRRGPVSWSPEAAVGEVRGGDTGPDEAGARQWLGTFDTAEDAARAYDRAAFNFRGHLAILNFPNEYYPQLRGTLPYPYLSSSSSSSSFQSGSSSSSSGSQYRQVFEFECLDNKVLEDMLEAEEEKRRRMGN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02204 181 PANTHER DNA-BINDING DOMAIN 58 173 IPR044808 GO:0003700|GO:0009873
Bva05g02204 181 Coils Coil 162 181 - -
Bva05g02204 181 MobiDBLite consensus disorder prediction 131 150 - -
Bva05g02204 181 ProSiteProfiles AP2/ERF domain profile. 45 113 IPR001471 GO:0003700|GO:0006355
Bva05g02204 181 MobiDBLite consensus disorder prediction 26 79 - -
Bva05g02204 181 Pfam AP2 domain 79 106 IPR001471 GO:0003700|GO:0006355
Bva05g02204 181 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Bva05g02204 181 MobiDBLite consensus disorder prediction 29 49 - -
Bva05g02204 181 PANTHER ETHYLENE RESPONSE FACTOR 58 173 - -
Bva05g02204 181 Gene3D AP2/ERF domain 24 114 IPR036955 GO:0003700|GO:0006355
Bva05g02204 181 SUPERFAMILY DNA-binding domain 77 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02204 Bva-Chr5 16794138 16794784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02204 50 176 AP2-EREBP Transcription Factor Family AT3G23230 59.843 5.03e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva05g02204 AP2 5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02204 - - qsu:111996186 120.938