Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02203 ATGAATTcctcttcaattttcaatcCTTCAAGCTCCGATTTCTCGTCGGAATCCTCCTTCGACTCGCCGGAATCATTTTCTTGGAATTTCCAGGAAGATTACCTTCCTTTCAATGAGAACGACCCTGAAGAAATGCTTCTCTATGGTCTAATCTCGAAGGGTGGCATCAACACTGTCCACCAACAAGCAATCCACATTGAAAAGCCGTTCCAGGGCACATTTTCCGTTAAGGAAGAAGAGGTGAGCTCGGAGGAGAAAGATTTGAGCCTGAGCCCGAGCCCGAGCCCGAGCCCGAGAAAGGAGAAGGCCTACCGCGGTGTCAGGAGGCGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGATTCCACCCGGCACGGCATAAGGGTGTGGCTGGGAACATTTGACAGTGCAGAAGCAGCAGCTTTAGCTTATGATCAAGCTGCTTTTTCCATGAGAGGCTCCGCGGCAATACTCAATTTCCCAGTTGAGAGGGTGAGGGAATCACTCAGAGAAATGAACTATGGAACTGAAGAAGGGTGCTCCCCTGTGGTGGCTCTGAAGAGAAAGCACTCcatgagaagaaaaatctcCAACAAGAAGCTCAAAGACAGAGACGTTAGAATAGACAATGTCGTCGTGTTAGAAGATTTAGGGGCAGATTACTTAGAACAACTGTTGATGTCTTCTGAGAATCCTAGACCATGGTg 707 0.471 MNSSSIFNPSSSDFSSESSFDSPESFSWNFQEDYLPFNENDPEEMLLYGLISKGGINTVHQQAIHIEKPFQGTFSVKEEEVSSEEKDLSLSPSPSPSPRKEKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVERVRESLREMNYGTEEGCSPVVALKRKHSMRRKISNKKLKDRDVRIDNVVVLEDLGADYLEQLLMSSENPRPW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02203 235 MobiDBLite consensus disorder prediction 1 25 - -
Bva05g02203 235 Gene3D AP2/ERF domain 102 163 IPR036955 GO:0003700|GO:0006355
Bva05g02203 235 PANTHER DNA-BINDING DOMAIN 29 228 IPR044808 GO:0003700|GO:0009873
Bva05g02203 235 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Bva05g02203 235 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Bva05g02203 235 SUPERFAMILY DNA-binding domain 103 163 IPR016177 GO:0003677
Bva05g02203 235 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Bva05g02203 235 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Bva05g02203 235 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Bva05g02203 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 29 228 - -
Bva05g02203 235 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Bva05g02203 235 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02203 Bva-Chr5 16773964 16774837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02203 35 235 AP2-EREBP Transcription Factor Family AT3G23240 63.768 8.88e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva05g02203 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02203 K14516 - pvy:116118059 264.233