Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02182 ATGGCAGATCCTGCATCTAGTTATGGGAATCCTGAGCGTGACATTGAGCAAGCACTAATAGCTTTGAAAAAAGGCACTCAGTTAGTTAAGTATAGTCGGAAAGCGAAACCGAAGTTTTGCCCATTCAGACTCTCACCAGATGAAACAACACTGATCTGGATTTCTCATGGAGCAGAAAGGAACCTAAAACTGTCTTCTGTTTCACGTATTATCCCAGGACAAAGAACTGCTGtctttaaaagatatttacgCCCTGATAAGGATTATCTgtcattttctcttatttataaCAACGGTGATAGATcacttgatttgATCTGCAAGGACAAAGCAGAGACAGAGGTATGGTTTGCAGCTCTTAAGGCATTAATTTCTTCTGGGCAGCATAATAGGCGTACTAGAAGTGAATTTTCTGATGATGGCTCCTCCAGTGGACGCCCTTCTAATGCAACACTAGAGTCTTGTTCAAGCATCAACCGTGGTAGAATATCTGTAGATTCAGTTTCACGTGAATCTCTATTCTTTTTGGCAATCTCAGATGTGGGGTCAAATATGCAACTAAGGGGTAGTGCTGGAGATGGTTTTCGTGTCAGTGTGTCAAGTACGCCTAGCTGTTCAAGTGGAGGATCTGGACCAGATGACATAGAGTCTCTAGGCGACGTTTATATATGGGGAGAGGTTTGGGCGGATGGAGTTTCACCTGATGGATTGGCTACTCCTGTTCCTTCAAAGACAGATGTGTTGGTTCCTAAGGCCTTGGAGTCAAATGTTGTTCTTGATGTTCAGCAGATTGCTTCTGGTGTGCGCCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACATGGGGAGAGGATTCTGGGGGAAGACTTGGACATGGTATTGATGTAGACTTTGGTTGCCCCCATCTTGTTGAGTCACTGGCAGTTACTAATGTGGAGTTTGTTGCATGTGGAGAGTATCACACATGTGCTTTATCTACATCTGGTGATCTATTTACTTGGGGTGATGGTACCCATAATGCTGGACTTCTAGGCCATGGAACTGATGCTAGTCACTGGATACCTAAGAGGGTTAATGGCCCTTTAGAAGGACTTCAAGTTCTATCCATTGCTTGTGGGACATGGCACTCAGCATTGGCAACTTCCAATGGAAAGCTGTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGGCAGAGTGTGTCATTTCCAAAGGAGGTACAGCTATTGAGTGGACTAAAGACAATAAAGGTTGCTTGTGGTGTATGGCACACTGCAGCTATTGTAGAGGTTATGGGTCAGACTGGTTCAAGTTCTTCATCCAGGAAGCTCTTCACTTGGGGTGATGGTGACAAATATCGTTTGGGACATGGAAACAGGGAAACCTACCTTCAGCCCACCTGTGTCTCTGCACTCATCGAATATGATTTTCACCAGGTTGCATGTGGACACACTATGACTGTTGCACTCACTACATCAGGTCATGTTTTTACTATGGGCGGCTCTTCTTATGGCCAATTAGGGAATCCTAAATCTGATGGAAGAGCACCTATCTTGGTGCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCGGTATTGACATCGAGGAGTGAACTATGTACATGGGGAAGAGGTGCCAGTGGAAGATTGGGACATGGAGACATAGAAGACCGTAAATCTCCAACATTGGTGGAGGCCTTGAAAGATAGGCATGTAAAGAATATCTCATGTGGCTCAAACTTCACATCCTGTGTATGCCTCCATAAATGGATTTCTGGAGCTGACCAATCTGTTTGCTCTGGTTGTCGTCAGGCATTCGGTTTTACTAGAAAAAGGCACAATTGTTATAATTGCGGACTGGTTCATTGCCATGCTTGTAGTTCCAAAAAAGCATATAAAGCAGCATTGGCTCCAACACCAGGCAAACCACATCGTGTGTGTGATGCTTGTTTTACAAAGCTTAAAGCTGCTGAGGTTGGCGGTGCTTCTGCTGGTAACAGAAAAGTCACTCCTCCTCGCCGTTCCGTAGATGGCAGTGTCAGGGAAAGAATAGACAGGGGAGAGGTAAGATCTGCAAGAGTCCTCTTGCCTCCCATCATTGAACCAATTAAATACCTTGAGATAAGGAGTGGGAAGCCTGGATCTAGATATGAGTCTTCTATAGTTCGAGCTTCTCAAGTTCCATCACTTTCgcaattaaaagatattgCATTTCCAAGTTCATTGAGTGCCATTCAGAGTGCATTCAAGCCTATTGTACCTCCACCAAATCCACCGGTCACACCGCCTGGGCAATCAAGACCTGTATCACCATATACAAGACGACCAAGCCCACCACGTTCTGCCGCTCCTGGTTTTTCTAAAAGCCTTATTGACAGCCTGAGGAAGACAATCGAACTTTTGAACCAAGAACTCTCAAAAATGCAGAACCAAGTTCAAAGTCTGAAGCAGAAGAGTGACTTGCAAGTTGTCGAGATTCACAAGCTTCAGAAAAATGTTAAGCAAGCCAACACACTGACCAGAGAGGAATCTTCTAGACACACAGCAGCAAAGAATTTTATCAAGTCCATCGCAGATCAGTTGAAGGAAATGGTTGAGAAGTTGCCGCCAGAGGCTTCAGATGGAGAAACCTTAGGAAACATGCTTACTCAAGCTGAAGAATTTCTAAAGAAAGATTCGGAAATTGAAGCATTTTCTTCCTTACCAGAAAACTTGGAGTCTGATCATCAAAATGCAGAGGGTGTAACTGCCTCAGAGAGTGACTCTTCTAAACTGCAAGAACAAGGAACAGAAGATGGAGGGAACAATCTTCAAGAAAGTAATGCACCATCTGTATCTGATACAGAAGCAGCAACGCCTCCacaaagtgcagaaaatggTTCAAGACCACCGAATCACCCTTCAAGGCCTACTAGGAGTgaagcagaaaataaaatcatcgAACAATTTGAACCTGGTGTTTACGTGACAGTCTTAGTACTTCCAAGTGGTAGGAAAGTTTTCAAAGGTGTTAGATTCAGCAAGCGAAGATTCAACGAACACCAGGCAGAAGAATGGTGGAACACAAACAAAGATAGGGTGCTTAGGAGATATGTTcaattatcatcatcattatcgTCATCAAATCTTGGATCTACTACCTCATCGGGTGCCCCAAGACGACCACCTCCCGATGAAGATACCGCCGATTA 3233 0.4278 MADPASSYGNPERDIEQALIALKKGTQLVKYSRKAKPKFCPFRLSPDETTLIWISHGAERNLKLSSVSRIIPGQRTAVFKRYLRPDKDYLSFSLIYNNGDRSLDLICKDKAETEVWFAALKALISSGQHNRRTRSEFSDDGSSSGRPSNATLESCSSINRGRISVDSVSRESLFFLAISDVGSNMQLRGSAGDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWADGVSPDGLATPVPSKTDVLVPKALESNVVLDVQQIASGVRHIALVTRQGEVFTWGEDSGGRLGHGIDVDFGCPHLVESLAVTNVEFVACGEYHTCALSTSGDLFTWGDGTHNAGLLGHGTDASHWIPKRVNGPLEGLQVLSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRQSVSFPKEVQLLSGLKTIKVACGVWHTAAIVEVMGQTGSSSSSRKLFTWGDGDKYRLGHGNRETYLQPTCVSALIEYDFHQVACGHTMTVALTTSGHVFTMGGSSYGQLGNPKSDGRAPILVQDKLVGEFVEEISCGAHHVAVLTSRSELCTWGRGASGRLGHGDIEDRKSPTLVEALKDRHVKNISCGSNFTSCVCLHKWISGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKAYKAALAPTPGKPHRVCDACFTKLKAAEVGGASAGNRKVTPPRRSVDGSVRERIDRGEVRSARVLLPPIIEPIKYLEIRSGKPGSRYESSIVRASQVPSLSQLKDIAFPSSLSAIQSAFKPIVPPPNPPVTPPGQSRPVSPYTRRPSPPRSAAPGFSKSLIDSLRKTIELLNQELSKMQNQVQSLKQKSDLQVVEIHKLQKNVKQANTLTREESSRHTAAKNFIKSIADQLKEMVEKLPPEASDGETLGNMLTQAEEFLKKDSEIEAFSSLPENLESDHQNAEGVTASESDSSKLQEQGTEDGGNNLQESNAPSVSDTEAATPPQSAENGSRPPNHPSRPTRSEAENKIIEQFEPGVYVTVLVLPSGRKVFKGVRFSKRRFNEHQAEEWWNTNKDRVLRRYVQLSSSLSSSNLGSTTSSGAPRRPPPDEDTAD 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02182 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
Bva05g02182 1077 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 16 1053 - -
Bva05g02182 1077 Pfam FYVE zinc finger 603 669 IPR000306 GO:0046872
Bva05g02182 1077 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Bva05g02182 1077 SUPERFAMILY RCC1/BLIP-II 218 604 IPR009091 -
Bva05g02182 1077 Pfam Transcription factor regulating root and shoot growth via Pin3 991 1045 IPR013591 -
Bva05g02182 1077 Pfam Pleckstrin homology domain 16 124 IPR001849 -
Bva05g02182 1077 Pfam Transcription factor BRX N-terminal domain 856 889 IPR027988 -
Bva05g02182 1077 Gene3D - 14 133 IPR011993 -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 1050 1066 - -
Bva05g02182 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Bva05g02182 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1053 - -
Bva05g02182 1077 ProSiteProfiles PH domain profile. 92 125 IPR001849 -
Bva05g02182 1077 PRINTS Chromosome condensation regulator RCC1 signature 546 567 IPR000408 -
Bva05g02182 1077 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Bva05g02182 1077 PRINTS Chromosome condensation regulator RCC1 signature 280 296 IPR000408 -
Bva05g02182 1077 PRINTS Chromosome condensation regulator RCC1 signature 387 401 IPR000408 -
Bva05g02182 1077 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Bva05g02182 1077 PRINTS Chromosome condensation regulator RCC1 signature 488 506 IPR000408 -
Bva05g02182 1077 Gene3D - 441 616 IPR009091 -
Bva05g02182 1077 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 607 669 IPR017455 -
Bva05g02182 1077 SUPERFAMILY FYVE/PHD zinc finger 603 669 IPR011011 -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 131 153 - -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 1050 1077 - -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 918 982 - -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 918 989 - -
Bva05g02182 1077 CDD FYVE_like_SF 613 665 - -
Bva05g02182 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Bva05g02182 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 278 326 IPR000408 -
Bva05g02182 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 449 495 IPR000408 -
Bva05g02182 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 384 433 IPR000408 -
Bva05g02182 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 498 547 IPR000408 -
Bva05g02182 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 329 380 IPR000408 -
Bva05g02182 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 553 598 IPR000408 -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 765 780 - -
Bva05g02182 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 264 274 IPR000408 -
Bva05g02182 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 329 IPR000408 -
Bva05g02182 1077 Gene3D - 182 340 IPR009091 -
Bva05g02182 1077 Gene3D - 341 440 IPR009091 -
Bva05g02182 1077 MobiDBLite consensus disorder prediction 763 801 - -
Bva05g02182 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 674 IPR013083 -
Bva05g02182 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Bva05g02182 1077 SMART fyve_4 599 670 IPR000306 GO:0046872
Bva05g02182 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 384 IPR000408 -
Bva05g02182 1077 SUPERFAMILY PH domain-like 14 124 - -
Bva05g02182 1077 Coils Coil 805 832 - -
Bva05g02182 1077 CDD PH_PLC_plant-like 13 125 - -
Bva05g02182 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02182 Bva-Chr5 16547338 16554354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02182 981 1046 Major Intrinsic Protein MIP AT1G31880 40.909 2.41e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02182 - - jre:109007178 1472.6