Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02181 ATGGGGCAAGGGCAATCCAAGGGCGAGCTTGTCTATCAGCAGGTCAGTTATGGGAACTCCGAAGGAATTAAAGCCCTTCGTAGAGAAGGTGCAAGCCTTGAGTGGATTGATAGAGAAGGAAAGACACCCTTGATTGTTGCTTGCATGAATCCAGAGCTTAATGATGTTGCCAAAACTTTGATAGAACttggtgcaaatattaatgCATATCGTCCGGGTCGTCATGCGGGGACTCCATTACATCATGCAGCCAAAAGAGGCCTTGAAAGTATTGTTAAGTTACTTCTTATGCATGGAGcAAATCCCTTGGTCTTGAATGACGATTGCCAAACTGCTCTTGATGTTGCCAGGGCTAAAGGGCACACCAATGTTGTCCGTGCAATAGAGAGCCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTTCATGGACCAGGATTCCTTGAAGTAGTAGCTCCTCAGTTGTTATCTAGAAAAGTATGGGTGGTTGTTTTACCAGTTGGCTCCCGTTCTCTTGCCACACCTTACAAGTTAGAACTTGCCATATATTCTAGTTTGCAGGATCCACGACCACGTGCAGTTATTGCTCTGTGGAAGGCCAACTTAGAAGAACCAAAGCTACACCAGTCGGATCCTTCAGCGACTATTGTTGATAATTCTAGAAAAACACGCATTAAACTTGGACCTGCAAGTGAGAATGACAAGCAACAACTTATGTGGTTTTCTGATGCATGCAAAGGAATTCCACAAGCTAGGCATCCAGCATTTTTGCAAAACAACCTGAGTACAGTTCCACCAACGGCACCACCAGCTGCAGAAGATCTAGAGATGGCTATGGCTATCAATGCGTCCATTCAGTCTGCCATGCAGGAGAGGCCACCCCTTCCAGATGCAGGGCCAACCTTTGAAGGAAGTTCTTCAAGTGGCCAAACTCATACAGGTAAGAATGATTCACTTGGTCCAACAAAGCCAAATATAAACATTAGCGAGTTTGTTCATGAAGCTGGCCCGAGCGGTAGTTCAAGTCAGCATGCCCAGATTCATGAAGATATCCCTGCCCAAACTGCTACTGGTTTGGATTCAATTCCATCAGCTCCTCCAGTAGATGGGATTCCAGAAGATGGTCCCATTCAGTATCCGTCGATTGATTTAAGCCCGGTTGATATATCGTCTCCAGCTGTTGGAAAGTTacccaaagaagaaaaagatgttGCAAGTGGTTCGTGTGCAATATGTCTAGATGCTCCAGCAGAGGGGGCGTGCATCCCATGTGGCCATGTTGCTGGATGCTTGTCTTGCTTGAATGAAGTCAAAGCAAAGAAATGGGGTTGCCCTGTCTGTCGGACAAAGATTGACCAGGTTATAAAGATATATcatgttta 1382 0.4457 MGQGQSKGELVYQQVSYGNSEGIKALRREGASLEWIDREGKTPLIVACMNPELNDVAKTLIELGANINAYRPGRHAGTPLHHAAKRGLESIVKLLLMHGANPLVLNDDCQTALDVARAKGHTNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLLSRKVWVVVLPVGSRSLATPYKLELAIYSSLQDPRPRAVIALWKANLEEPKLHQSDPSATIVDNSRKTRIKLGPASENDKQQLMWFSDACKGIPQARHPAFLQNNLSTVPPTAPPAAEDLEMAMAINASIQSAMQERPPLPDAGPTFEGSSSSGQTHTGKNDSLGPTKPNINISEFVHEAGPSGSSSQHAQIHEDIPAQTATGLDSIPSAPPVDGIPEDGPIQYPSIDLSPVDISSPAVGKLPKEEKDVASGSCAICLDAPAEGACIPCGHVAGCLSCLNEVKAKKWGCPVCRTKIDQVIKIYHV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02181 460 Gene3D - 8 134 IPR036770 -
Bva05g02181 460 PANTHER ROLLING PEBBLES, ISOFORM B 1 460 - -
Bva05g02181 460 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 460 - -
Bva05g02181 460 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Bva05g02181 460 MobiDBLite consensus disorder prediction 357 378 - -
Bva05g02181 460 SMART ring_2 409 447 IPR001841 -
Bva05g02181 460 Pfam Zinc finger, C3HC4 type (RING finger) 407 454 - -
Bva05g02181 460 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Bva05g02181 460 SUPERFAMILY Ankyrin repeat 13 133 IPR036770 -
Bva05g02181 460 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Bva05g02181 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 460 IPR013083 -
Bva05g02181 460 SMART ANK_2a 108 137 IPR002110 GO:0005515
Bva05g02181 460 SMART ANK_2a 39 69 IPR002110 GO:0005515
Bva05g02181 460 SMART ANK_2a 75 104 IPR002110 GO:0005515
Bva05g02181 460 SUPERFAMILY RING/U-box 408 454 - -
Bva05g02181 460 MobiDBLite consensus disorder prediction 291 326 - -
Bva05g02181 460 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Bva05g02181 460 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Bva05g02181 460 MobiDBLite consensus disorder prediction 301 325 - -
Bva05g02181 460 ProSiteProfiles Zinc finger RING-type profile. 409 448 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02181 Bva-Chr5 16541637 16545703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02181 409 457 C3H Transcription Factor Family AT3G06140 32.653 5.07e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02181 - - gmx:100789309 687.182