Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02168 ATGTTAAAGAAGGTGGTTTCTGGGTTGTTGATTTCTTCGCTCCTCGTGTGCGTATTTGCTACAGAAAATGTATTCCCTAGATGTAATTGTGATGATGAGGGCAGCTTGTGGACGTTTGAGAGCATTTTAGAGTGCCAGAGAGTAAGCGATTTCTTTATTGCTGTGGCCTACTTCTCCATTCCTATTGAGCTGCTTTATTTTGTCAGTTGCTCAAATGTCCCATTCAAATGGGTTCTGATTCAGTTCATTGCCTTCATTGTCCTGTGTGGACTGACACATTTGCTGAATGGATGGACTTATGGCCCTCACTCTTTTCAACTTATGGTGGCACTTACCGTCTTCAAAATTCTCACCGCCTTGGTGTCATGTGCCACTGCTATCACCCTCATTACGCTCATTCCTTTGCTTCTCAAAGTGAAGGTTAGAGAATTTATGCTGAAGAAGAAGACCTGGGATCTTGGACGAGAGGTTGGTAtgataatgaaacaaaaagaggCTGCAGTGCATGTTAGAATGCTCACTCAAGAGATTCGAAAGTCGCTTGATAGGCATACAATTTTGTACACCACCTTGGTTGAGTTATCCAAAATACTGGGTTTGCAAAATTGCGCTGTCTGGATGCCTGACGTTGAGAAAACAGAGATGAACCTGACTCATGAATTGAATGGGAggaattttaacttttgtatACCAATTACAGATGCAGATGTTGTGAGAATCAAGGGAAGTGATGGAGTAAATATTCTTAACCCTGACTCGGCCCTTGCTACTGCCAGTAGTGGAATTTCTGGTAAGCCAGGACCAGTGGCTGCAATTAGAATGCCAATGCTCAGGGTTTGCAATTTTAAAGGGGGAACACCTGAGATAACGCAGGCATGTTATGCAATATTAGTCTTAATTCTTCCCTCTGGGCTGTCCAGATCTTGGAACGTTCAGGACCTGGAGATAATTAAGGCAGTTGCTGATCAGGTGGCTGTTGCTCTATCTCATGCTGCAATTCTTGAAGAGTCTCAACTCATGAGAGAGAAGTTGGAAGAACAAAACCGAGCCTTGCAACAGGCAAGAAAGAATGCTATGATGGCTAGCCAGGCAAGAAGCTCATTTCAGAAGGTAATGAATGATGGAATGAGGAGGCCCATGCACTCAATTTTGGGTTTGCTTTCAATGATAAGAGATGAGAATTTGAAGAGTGAACAAAAGCTTATTGTGGATGCAATGTTGAGGACCAGCAATGTCCtatcaaatttgataaatgatgCCATGGACAATTCAGCAAAGGATGATGGAAGATTTCCATTAGAGATGAGATCTTTTGGATTACATGCTATGATAAAAGAAGCAGCTTGCCTTGCCAAATGCATGTGTGTTTATAGGGGCTTTGGTTTTGCGGTTGAAGTTGACAAGTCTATGCCAGACAACGTTATGGGTGATGAGAGGAGGGTATTCCAGGTGATTCTGCATATGGTTGGGAACCTACTGAATGCTCATCATGAGGGAGGGATTCTTGTACTTCGGGTTTTTGTAGAAAGTGGAAGCCAGGGAAGAACAAACTGGAGACCGAGCTCATCTAGTggggatatatatattagagttGAGATAGGGATCAACAATAGTGATTCTGAATCAGAAAGCTCAGTTTCTCTAGGACAGCCTGGTGGTAGGAAACGTGCCAGTGATAGAGTCGAGGGCAGATTGAGCTTCAGTATTTGTCAAAGGATTGTTCAGTTGATGCAAGGGAACATATGGTTAGTGCCAAATGCTCAAGGTTTTCCTCAAAGCATGGCCCTTGTTCTTCGGTTTCAATTACGGCCATCTATTGCCATAGCCATATCTGAGCCTGGAGAATCTTCAGAGAGGACAGATTCTAATTCTCTCTTTGGTGGTCTGCAAGTCCTGCTGGCTGACAATGATGATGTAAATAGAGCCGTGACTCGAAGATTGCTTCAGAAGTTAGGCTGCACTGTAACTGCTGTTTCATCCGGGTTCGAATGCCTTTCTCTCATAGGACCTGCTACATCTTCTGTTCAACTCATTATTTTGGATCTTCACATGCCAGATTTAGATGGCCTTGAAGTTGCCACAAGGATTCGGAAGTTTAGAAGCCGAAACTGGCCGATGATCATTGCCTTGACGGCAAGTGTAGATGAAGATTTGTGGGAAAAATGCATGCAGATTGGTATAAATGGAGTCATCAGAAAACCAGTTTTGTTGCAAGGAATTTCCAGTGAACTCAAAAGAATCTTGGTGCAGGGAAATAGAATCATGTG 2267 0.4204 MLKKVVSGLLISSLLVCVFATENVFPRCNCDDEGSLWTFESILECQRVSDFFIAVAYFSIPIELLYFVSCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMVALTVFKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVGMIMKQKEAAVHVRMLTQEIRKSLDRHTILYTTLVELSKILGLQNCAVWMPDVEKTEMNLTHELNGRNFNFCIPITDADVVRIKGSDGVNILNPDSALATASSGISGKPGPVAAIRMPMLRVCNFKGGTPEITQACYAILVLILPSGLSRSWNVQDLEIIKAVADQVAVALSHAAILEESQLMREKLEEQNRALQQARKNAMMASQARSSFQKVMNDGMRRPMHSILGLLSMIRDENLKSEQKLIVDAMLRTSNVLSNLINDAMDNSAKDDGRFPLEMRSFGLHAMIKEAACLAKCMCVYRGFGFAVEVDKSMPDNVMGDERRVFQVILHMVGNLLNAHHEGGILVLRVFVESGSQGRTNWRPSSSSGDIYIRVEIGINNSDSESESSVSLGQPGGRKRASDRVEGRLSFSICQRIVQLMQGNIWLVPNAQGFPQSMALVLRFQLRPSIAIAISEPGESSERTDSNSLFGGLQVLLADNDDVNRAVTRRLLQKLGCTVTAVSSGFECLSLIGPATSSVQLIILDLHMPDLDGLEVATRIRKFRSRNWPMIIALTASVDEDLWEKCMQIGINGVIRKPVLLQGISSELKRILVQGNRIM 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02168 755 SUPERFAMILY CheY-like 627 747 IPR011006 -
Bva05g02168 755 SMART gaf_1 182 338 IPR003018 GO:0005515
Bva05g02168 755 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 584 IPR003594 -
Bva05g02168 755 PANTHER ETHYLENE RESPONSE SENSOR 2 12 752 - -
Bva05g02168 755 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Bva05g02168 755 Gene3D - 330 427 - -
Bva05g02168 755 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 429 IPR036097 GO:0000155|GO:0007165
Bva05g02168 755 CDD REC_ETR-like 629 744 - -
Bva05g02168 755 Gene3D - 428 599 IPR036890 -
Bva05g02168 755 SMART REC_2 629 748 IPR001789 GO:0000160
Bva05g02168 755 ProSiteProfiles Response regulatory domain profile. 630 748 IPR001789 GO:0000160
Bva05g02168 755 Gene3D - 629 753 - -
Bva05g02168 755 Pfam GAF domain 182 328 IPR003018 GO:0005515
Bva05g02168 755 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 586 IPR036890 -
Bva05g02168 755 CDD HATPase_ETR2_ERS2-EIN4-like 470 598 - -
Bva05g02168 755 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Bva05g02168 755 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 12 752 - -
Bva05g02168 755 Coils Coil 334 364 - -
Bva05g02168 755 SUPERFAMILY GAF domain-like 185 331 - -
Bva05g02168 755 MobiDBLite consensus disorder prediction 539 559 - -
Bva05g02168 755 Pfam Response regulator receiver domain 631 737 IPR001789 GO:0000160
Bva05g02168 755 Gene3D - 162 329 IPR029016 -
Bva05g02168 755 ProSiteProfiles Histidine kinase domain profile. 371 600 IPR005467 -
Bva05g02168 755 PIRSF Ethylen_sen_hybr_HK 1 755 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02168 Bva-Chr5 16451707 16455967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02168 22 748 Miscellaneous Gene Families AT3G04580 56.586 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva05g02168 GAF 4.7e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02168 K14509 - gmx:100787425 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02168 05 16451707 16455967 Bva05g02168 05 16451707 16455967 ECH