Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02141 ATGACAGTGACCACAGAAAAGGCTAAGGTCAATAAAGGAAAGGTCATAGCATGCTTGACATGCAAATTATGTCAAGGCATTTTCAGAGAGGCTACAACAATCTCAGAATGCTTACATACCTTACATGGGAAACCAATTTCTTTGGAATCCTTTTCAGACATTAAGCATAATGTTCTGTGCATTCTCAGGGCTGATCGAGCCTTGCAAGATCTAACCGAGAAGCTTCTCCCCGGTGGAGAGAAGGATAATGCCACCGCATCTGATGCTGTGCCTTCTACTCCAGCAGCAGAAAATGTGGCTTCAGTTCCACAACCTGAGACTCAGCCTTCAGTTCCTGAACCAACAATACGAAAAGAGAGGACTCTCTCTTCGATAGCAGCTAAGACTCGTAAGCTATCAAGCCGAGCAAGTTTATCAGCAAGAAGAGCAAGAGCAGCTGGAAAAAGAATCCTTGATGCACAAGAATCCCCTCATTCTAAAGCTCAAACTTATAAAGTAGCAGAATCTAACCCGATTGACGAGAAGAAAGCTGCACTTGAACTTGTGCAGCAAATTTCTACACATCTCTCTGAAAGACGGGCAAAAGCTGCAGCAAGGAAAAAACTTCTTGAACAAGCCACTGCTTCTGCTGATGAACCTGCTAATGTAGAAgtagaaaatgagaaagcaGGGAAACGCTGTGTGATTGAAGCTTTGGAAGACAATTCTGAAACTGGAAATCAGCAGAATAATACAGAACCAGCTTTGAGCTACCAAAATATGCCCCACCAGAATCCAAAGGACAATGCTGAGGTACACAAAGAAAAGCCTGATAATTTGGATTCAGTAAATTTTCTGGTGGGAGCTGCAAGCAAGACAAAGCCAAGCACAATCATCAGGGAAGGAAGTTCCAACACTCCATTGCCAAAGTTTAACTCGAAAGAAAAGTCTATCCCACCAGTGCCAAACTTCAATATGCATGAGAAATCTGTGTCACCGGCACCTACTTTCAGCATGAAAGCAGTGGCTGTTGATTCCAGTGATGAGAATCCCAGTGTGGCTAAGGTCAATTTGGAGTTGCACAACGGGGAAACAAACGCGAATGGCAGACAAAACAAGTTGGTACCTCAAGAAATAAGTCCTGTGAAAGCTAGAAAGTTGAGGAGCACCAAACAGAGAAAAGCCAGGATGTGCCAGGACTTGAATcttccaccaccaccaccaccaacaCCGGCACCAGCACTGGCACTGGCACCAACTATGGCTAGTTCAAGCAGTAGAACCAGTGAAAGAGTCGCGTCTTTTTGGTTCTCCTTAGTTGCTTCCCAAGAGCAGGAAATAGATGCAGTTTTGCCACAGATACCTGCTCGCTTTTTAAGGGTCAATGATGCTAGCTTACCTGTGTCATTTATCCAAAGATATCTCAAGATTAAGCTTGGTCTTGCAAGCGAAGATGAGGTGGAGATCTTATTGAAAGGTTATCAGGTTCTGTCCTCATGGCAACTGCAGAATCTGGTAGAGCTGTGGCACACGACATTGACAAACCATGAGAAGATACATTCATACGTTGGCAGTTCAGCCGAGGATTTTGTCATGGTTCTCTCGTACCGTCGAAGGCTTCACATCTG 1607 0.4319 MTVTTEKAKVNKGKVIACLTCKLCQGIFREATTISECLHTLHGKPISLESFSDIKHNVLCILRADRALQDLTEKLLPGGEKDNATASDAVPSTPAAENVASVPQPETQPSVPEPTIRKERTLSSIAAKTRKLSSRASLSARRARAAGKRILDAQESPHSKAQTYKVAESNPIDEKKAALELVQQISTHLSERRAKAAARKKLLEQATASADEPANVEVENEKAGKRCVIEALEDNSETGNQQNNTEPALSYQNMPHQNPKDNAEVHKEKPDNLDSVNFLVGAASKTKPSTIIREGSSNTPLPKFNSKEKSIPPVPNFNMHEKSVSPAPTFSMKAVAVDSSDENPSVAKVNLELHNGETNANGRQNKLVPQEISPVKARKLRSTKQRKARMCQDLNLPPPPPPTPAPALALAPTMASSSSRTSERVASFWFSLVASQEQEIDAVLPQIPARFLRVNDASLPVSFIQRYLKIKLGLASEDEVEILLKGYQVLSSWQLQNLVELWHTTLTNHEKIHSYVGSSAEDFVMVLSYRRRLHI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02141 535 MobiDBLite consensus disorder prediction 234 259 - -
Bva05g02141 535 MobiDBLite consensus disorder prediction 290 314 - -
Bva05g02141 535 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 8 172 - -
Bva05g02141 535 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 8 172 IPR044807 GO:0004842
Bva05g02141 535 Coils Coil 215 235 - -
Bva05g02141 535 MobiDBLite consensus disorder prediction 233 267 - -
Bva05g02141 535 MobiDBLite consensus disorder prediction 86 106 - -
Bva05g02141 535 MobiDBLite consensus disorder prediction 77 169 - -
Bva05g02141 535 MobiDBLite consensus disorder prediction 290 305 - -
Bva05g02141 535 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 185 532 IPR044807 GO:0004842
Bva05g02141 535 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 185 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02141 Bva-Chr5 16206290 16210018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02141 433 529 C3H Transcription Factor Family AT3G23060 45.361 2.37e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02141 K16277 - qsu:112004742 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02141 05 16206290 16210018 Bva05g02141 05 16206290 16210018 ECH
Bva05g02141 05 16206290 16210018 Bva04g02825 04 24247344 24253110 ECH
Bva05g02141 05 16206290 16210018 Bva13g02748 13 20134139 20140684 ECH