Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02139 ATGGCAACTTTGCTTGGGAAGGAGAATGGTTTGAATCTGAAGGAGACTGAATTATGCTTGGGATTGCCCGGCGGTGGCGGTGGAAGTGATCAGGTGGAGACACCGAGAACCATCACCGGAAAGAGAGGTTTCTCTGAGACTGTTGATCTCAAGCTCAATCTTCAATCAAAGGAAGATCTGAATGAGAATTTGAAGAATGCCTCAAAGGAGAAGAGCCTACTTAAGGACCCTGCCAAGCCCCCAGCCAAGGCTCAGGTGGTGGGTTGGCCACCAGTGCGTTCCTACAGGAAGAACGCAATGGCACAGAAGGTTAACAGTGATGAAGAGAAAAGCGAGAAGAACACAAGCAGCAGCACTGCAGCTGGAGCATTTGTCAAGGTTTGCATGGATGGTGCACCCTACCTTCGTAAGGTAGACTTGAAAATCTACAAAAGCTACCAACAACTATCTGATGCCTTGGCCAAGATGTTCAGCTCCTTCACCATGGGTGAATATGGGACCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAATATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCTATTGGACTTGCCCCAAGAGCCATggaaaaatgcaaaagcaGAAGCTG 722 0.4695 MATLLGKENGLNLKETELCLGLPGGGGGSDQVETPRTITGKRGFSETVDLKLNLQSKEDLNENLKNASKEKSLLKDPAKPPAKAQVVGWPPVRSYRKNAMAQKVNSDEEKSEKNTSSSTAAGAFVKVCMDGAPYLRKVDLKIYKSYQQLSDALAKMFSSFTMGEYGTQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02139 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 233 IPR003311 GO:0005634|GO:0006355
Bva05g02139 240 Gene3D - 116 234 - -
Bva05g02139 240 ProSiteProfiles PB1 domain profile. 122 222 IPR000270 GO:0005515
Bva05g02139 240 SUPERFAMILY CAD & PB1 domains 114 221 - -
Bva05g02139 240 Coils Coil 47 70 - -
Bva05g02139 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 233 - -
Bva05g02139 240 Pfam AUX/IAA family 37 231 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02139 Bva-Chr5 16187269 16189744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02139 112 230 B3 DNA Binding Superfamily AT4G23980 30.252 1.72e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva05g02139 AUX_IAA 2.6e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02139 K14484 - gmx:100810762 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02139 05 16187269 16189744 Bva05g02139 05 16187269 16189744 ECH
Bva05g02139 05 16187269 16189744 Bva04g02833 04 24283820 24286074 ECH