Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02138 ATGGAGAACACAGTGGCTTATGGAAATTATCTGAACCTCAAGGCAACAGAGCTGAGATTGGGGTTACCAGGGACAGAAGAAAGGGAGGAAAAGGCACTGCCTAATGCTATTAGGAACAACAAGAGGCCATTATCTGAGTCTTCTCAAGAGTGTGGATCAAAGAGCTCTAATGCACAAGATGAAGGAAGTGAAGCTGCCCCTCCTGCCAAGGCAAAGATAGTTGGGTGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCAGGAGGCTGAGGGTTCTGGGATCTATGTCAAAGTAAGCATGGATGGAGCCCCTTACCTCAGAAAAATTGACTTGAAGGTTTATGGAGGTTACCCACAACTCCTCAAAGCTTTGGAAAACATGTTCAAGTTGACCATAGGGGAATACTCTGAAAGAGAGGGTTACAAGGGATCAGAACATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGATATGTTCATGACATCCTGCAAGAGGCTAAGAATCATGAAAGGATCAGAAGCTAGAGGTTTGGCTTGTGGGGTTTG 575 0.4574 MENTVAYGNYLNLKATELRLGLPGTEEREEKALPNAIRNNKRPLSESSQECGSKSSNAQDEGSEAAPPAKAKIVGWPPIRSYRKNSLQEAEGSGIYVKVSMDGAPYLRKIDLKVYGGYPQLLKALENMFKLTIGEYSEREGYKGSEHAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSEARGLACGV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02138 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 188 IPR003311 GO:0005634|GO:0006355
Bva05g02138 191 SUPERFAMILY CAD & PB1 domains 84 180 - -
Bva05g02138 191 MobiDBLite consensus disorder prediction 22 70 - -
Bva05g02138 191 MobiDBLite consensus disorder prediction 40 62 - -
Bva05g02138 191 PANTHER AUXIN-INDUCED PROTEIN 11 188 - -
Bva05g02138 191 Gene3D - 88 191 - -
Bva05g02138 191 MobiDBLite consensus disorder prediction 22 36 - -
Bva05g02138 191 Pfam AUX/IAA family 50 188 IPR033389 -
Bva05g02138 191 ProSiteProfiles PB1 domain profile. 94 181 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02138 Bva-Chr5 16170228 16171761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02138 29 190 B3 DNA Binding Superfamily AT4G23980 27.778 4.05e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva05g02138 AUX_IAA 1.1e-52 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02138 05 16170228 16171761 Bva05g02138 05 16170228 16171761 ECH
Bva05g02138 05 16170228 16171761 Bva04g02834 04 24291888 24293077 ECH