Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02125 ATGATAGGAATGGAAATAATACCCATAGGGACCATTCTGGCAGTGCTAACCAACCAGGTCTTGAAGACTGCTCATGCAGCATCTGATGTTCTTATTGATAAGGAAAGTTTTAAGGTCCTTTCAAAGCACCTGCTTGATATTGAACCAGTCCTAAAGGAATTGCAGCTTCAAGAGTTGAACGAATCTGAAGCTGCAAGGGCTGCTTTGGAGTCCCTTGAAGCAGATGTTAAAAGGGTTCATAATTTGGTTGAGAAGTGTAGAAACCGTGGTCGTTTCTACTTACTGGTTAAGTGCAGATCTATAGTTAAGGAGGTTGAACAAGTAACAAGAGACATTGGAAAATCTCTGGCCGCACTGTCTCTTGCAAATACTGCTGTTTTGTCAAGAATTTCTGATCAGGTTAATAGACTACAGAACGAGATGCAAAGGGTAGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGAAAAGTTGGACCAGGGTCTTCGGGAACAGAAACTAGATCAGACTTTTGCGAACAATATGCTTGAGGAAATAGCAAGGGCAGTTGGTGTGCCAGTGGAGCCCTCAGAGATAAGCAAAGAGCTGGCCAGcatcaaaatggaaaaagaagaagctgctAACAGGAAAGAAAGGGccgaagaaatatttttggagCAGGTAATTGAGTTACTCTCTCGAGCTGATGCTGCGAGGGATTATGAAGAAATCAAGAAGCAATACATTGAAAGGGTTCTAGTGATAGAGCGATATGAAGGATATATTGAACCATATAATTCTTTCCTTTGTAGTATAACGGGAGATGTTATGATAGATCCCGTCAGCCTTTGCACTGGCACTACATGTGAGAGGTCTGCCATTGAAGCTTGGTTTGACAATGGCAACAGGACTgatccaaaaacaaaagaggtTCTTGAAGATACCACATTGAGGTCTAACATTCCATTGAGACATTCCATTGAAGAGTGGAGAGAACTTAATTACTGCCTTACAATTAGGTCAATCAGGGAAAACTTAATATCTGTCTCTGGATTATCCGTGCAAGAATCCCTGATTCAAATACAGGATCTTATAAGAGAGAATTCTATAAATAAGGATTGGGTTTCTATAGGACAGCTTACTGATCTTCTTATCAAACTCCTTGGGAACTCTGATAATAGTGAAGTGAAGATGatgattttaattactttgaaGGACGTGGTAGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTCGAATCTCATGGATGGGATCACATTATTTGCTGCTTGGGTAGTACGTCTAGCATCTCAAAGGCAGCAATTGGCTTGTTGTATGAGTTACTGCAAGATCGATCTGGTTGGAATGCGAGTTTATGCAGAAAACTCTCTCATAATAGCAATGCAGTTCGTTTCCTTGTTAGCTTTCTAAAGGGTCCTGTCAATGAGTCACCTGAGATCACAGAAAAGATATTGAAAGAGCTTTTTGACATAGATGAGGACAATATTTCTAGAGCTGCTAAGTTTGGATGGTATAAGCCACTTGTTAATCACTTGGTTAGAGGATCAGAGTCTTCAAGAATATCAATGGTGAAAACAATAGTTAACATGGAGTTGAATGATTTAGATTTGAAACTCTTTGGTGAGGAGAGAGTTATACCTCCTTTGCTTGAAATGCTGATTGGCGGTATTGAATCAAAAGAATTGTCATTATCTGCTTTGGTAAAATTAGCAGGTTCTCATGCCAATAGGAGGATTATTGCTGCATCTGGAGGTGTCCCTCTCATCATAGAATTAATGTTCTCTCCTCGGATGCGGACATTTATCACCATTAAATGTGCTGAAATTCTTGagaagctttcttcttctgatgatggaattgatttctttgttgatGGAGAAGGGAAGCAACTTCAGTTAGATTCAATTATTACCAATTTATTAACTTTGCAACTGAGTCCCAGCTCAGCCCACAATGTCCGCAAGCCAGCATTGCGTGCCCTTCTTGGGATTTGCAAATTTGATACAGATTTAGTTAAGAAGGCAGTCCTTACTGCCAATGGTGTGTCTCTAATTCTTCCCCTTCTTGATGATTCTGATTCAGAAATTAGGGAGACCGCCATTAATCTGCTTTTTCTGTTCTCTCAGCATGAGCCAGAAGGAGTAGTTGAATACCTTTTCAGGCCTAGAAGACTAGAGGCTTTGGTTGGATTTCTCGAGaatgatgataataatgatGTGCAGATGGCTGCTGCTGGTTTAATAGCTAACCTACCGAAATCAGAGAGAGAACTAACTATGAAGTTGATTGAGTTAGGAGGACTTGATGCAATCATTAGCATTTTGAAAACTGGCACAatggaagcaaaagaaaatgctcTCAGTGCACTCTTCAggttcacagatccaacaaaTATTGAGTCACAGCGTGATTTGGTCAAACGTGGAATATATCCTTTGCTTGTGAATTTTCTCACTACTGGTTCAATTACAGCAAAGGCAAGAGCAGCTGCATTCATCGGTGATATTTCTATGAGCAGTCCAAAGCTCACAGATGTCTCCAAAGCCACTGGTTGCTGGTGTTTCAGATCTTCGCTAGCTCCTTTATGTTTAGCTCATGGGAGTGTATGCAGTGTGAGTACCACTTTTTGTCTGTTGGAAGCAAATGCTTTGCCAGGCTTGGTAAATCTGTTGCATGGGGAGGTTCATGCAACAGCTTATGGAGCAATACAAACACTTTCCACCTTGGTTTTGGAAGATTGTCCTCAAAGGGGAGCCCGTGTTTTGCATGAGGCAGATGGAATAATGCCCCTATTGGAGATTTTGGTTTGGGGGAGTGATGCTCTCAAGGCAGAGACTCTAGGACTCTTGGAGAAGATCTTTGTGTCAAAGGAAATCGTAGAATACTATGGATCAACGGCTAGATCACGTCTAGTTGGCCTCACTGGCAGGAATGTTCATGGGGAAGGCCACCTAAGGAGGAAGACTGCAAGGGTATTGTCATTGCTCGAACGCTACTCAAGGTCATCTTCAGCTGCCATATCAGGACTCTTAGAATA 3041 0.393 MIGMEIIPIGTILAVLTNQVLKTAHAASDVLIDKESFKVLSKHLLDIEPVLKELQLQELNESEAARAALESLEADVKRVHNLVEKCRNRGRFYLLVKCRSIVKEVEQVTRDIGKSLAALSLANTAVLSRISDQVNRLQNEMQRVEFEASQSQLQIVEKLDQGLREQKLDQTFANNMLEEIARAVGVPVEPSEISKELASIKMEKEEAANRKERAEEIFLEQVIELLSRADAARDYEEIKKQYIERVLVIERYEGYIEPYNSFLCSITGDVMIDPVSLCTGTTCERSAIEAWFDNGNRTDPKTKEVLEDTTLRSNIPLRHSIEEWRELNYCLTIRSIRENLISVSGLSVQESLIQIQDLIRENSINKDWVSIGQLTDLLIKLLGNSDNSEVKMMILITLKDVVEGHARNKEKVVESHGWDHIICCLGSTSSISKAAIGLLYELLQDRSGWNASLCRKLSHNSNAVRFLVSFLKGPVNESPEITEKILKELFDIDEDNISRAAKFGWYKPLVNHLVRGSESSRISMVKTIVNMELNDLDLKLFGEERVIPPLLEMLIGGIESKELSLSALVKLAGSHANRRIIAASGGVPLIIELMFSPRMRTFITIKCAEILEKLSSSDDGIDFFVDGEGKQLQLDSIITNLLTLQLSPSSAHNVRKPALRALLGICKFDTDLVKKAVLTANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNNDVQMAAAGLIANLPKSERELTMKLIELGGLDAIISILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLTTGSITAKARAAAFIGDISMSSPKLTDVSKATGCWCFRSSLAPLCLAHGSVCSVSTTFCLLEANALPGLVNLLHGEVHATAYGAIQTLSTLVLEDCPQRGARVLHEADGIMPLLEILVWGSDALKAETLGLLEKIFVSKEIVEYYGSTARSRLVGLTGRNVHGEGHLRRKTARVLSLLERYSRSSSAAISGLLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02125 1013 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Bva05g02125 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 332 IPR013083 -
Bva05g02125 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
Bva05g02125 1013 Gene3D - 4 123 IPR036537 GO:0007166
Bva05g02125 1013 SMART arm_5 915 956 IPR000225 GO:0005515
Bva05g02125 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Bva05g02125 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Bva05g02125 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Bva05g02125 1013 SMART arm_5 405 444 IPR000225 GO:0005515
Bva05g02125 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Bva05g02125 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Bva05g02125 1013 CDD RING-Ubox_PUB 262 304 IPR045210 -
Bva05g02125 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1009 - -
Bva05g02125 1013 Gene3D - 857 977 IPR011989 -
Bva05g02125 1013 SUPERFAMILY RING/U-box 255 327 - -
Bva05g02125 1013 Pfam MCAfunc domain 24 155 IPR045766 -
Bva05g02125 1013 Gene3D - 346 486 IPR011989 -
Bva05g02125 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1009 - -
Bva05g02125 1013 Coils Coil 127 154 - -
Bva05g02125 1013 SUPERFAMILY ARM repeat 641 982 IPR016024 -
Bva05g02125 1013 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Bva05g02125 1013 SUPERFAMILY ARM repeat 367 752 IPR016024 -
Bva05g02125 1013 Coils Coil 62 89 - -
Bva05g02125 1013 Coils Coil 197 217 - -
Bva05g02125 1013 Pfam U-box domain 261 326 IPR003613 GO:0004842|GO:0016567
Bva05g02125 1013 Gene3D - 487 853 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02125 Bva-Chr5 16094225 16099401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02125 259 965 U-box Gene Family AT1G76390 28.212 2.77e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02125 - - gsj:114377374 1509.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02125 05 16094225 16099401 Bva05g02125 05 16094225 16099401 ECH